DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Ptx1

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster


Alignment Length:459 Identity:122/459 - (26%)
Similarity:181/459 - (39%) Gaps:116/459 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 SVSAISRLVRGRDAP-LDNDMSSASGSPAG------DGTKASSSC---GSDVSGGHHNNGKPSDE 196
            |.|:::.:....|:. |:|..:|::.|.:.      ||.::.:..   ..::|...|      ||
  Fly   188 SHSSMTAVANSLDSTHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGH------DE 246

  Fly   197 DISDCESEPGIALKRK-QRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVW 260
            .::....||....|.| |||.||.|::.||.|||..|.|.:|||:.||||:|..|||||||::||
  Fly   247 PMTTSGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVW 311

  Fly   261 FSNRRARLRKQHTSVSGGA------PGGAAASVSHVAASSSLPSVV-----SSVPSMAPLAMMP- 313
            |.||||:.||:..:....|      ..|.........|..||.|..     :.|||  ||...| 
  Fly   312 FKNRRAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPS--PLGTKPF 374

  Fly   314 -------GSLDPATVYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTAS 371
                   ||:           ..|:|...||:.....||     |:..           |.|.||
  Fly   375 PWPVNPLGSM-----------VAGNHHQNSVNCFNTGAS-----GVAV-----------SMNNAS 412

  Fly   372 YIMPGENG----NTTPTGNIIVSSYETQLGSVYGTETETHQTMPRNESPN---------ESVSSA 423
             ::||..|    ||:..|.:......|...:.|...:.....|..:.|.:         :..|:.
  Fly   413 -MLPGSMGSSLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAG 476

  Fly   424 FGQ--LPPTPNS------LSAV-VSGAGVT-----SSSGA--NSGADPSQSLANASAGSEELSAA 472
            ||.  ..|:|.|      |||. .:|.|||     ::.||  |......|..:..|.|...:...
  Fly   477 FGSPYSAPSPVSRSNSAGLSACQYTGVGVTDVVXENALGALLNQHQHHLQHFSGGSVGGSGVPNG 541

  Fly   473 LKVESVDL-------IAASQSQLYGGWSSMQALRPN------------APLSPEDSLNSTSSTSQ 518
            ::..|.::       :..|...|.||..|......|            |||:  :|.|:.::.:.
  Fly   542 MQQHSGNMLHHSNLGLDHSDLGLVGGGPSNHQDEGNHSLEGSNKSPMEAPLA--NSSNNNNNDND 604

  Fly   519 ALDV 522
            ..||
  Fly   605 DEDV 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 2/11 (18%)
Homeobox 217..269 CDD:278475 32/51 (63%)
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 32/51 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450931
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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