DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and ro

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:141 Identity:49/141 - (34%)
Similarity:62/141 - (43%) Gaps:31/141 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 GKPSDEDISDCESEPGIALKRK---QRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNL 252
            |.|||...|...|......:||   |||.|||||..|...||..|.|.:|.....|.|||:...|
  Fly   166 GFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRL 230

  Fly   253 TEARIQVWFSNRRA---RLRK----QH--------------------TSVSGGAPGGAAASVS-H 289
            ||.:|::||.||||   |:.|    ||                    |...||..||.|..|. :
  Fly   231 TETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLN 295

  Fly   290 VAASSSLPSVV 300
            ..|:::.|:.:
  Fly   296 YYAAAATPAAL 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 28/58 (48%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 24/51 (47%)
Blue background indicates that the domain is not in the aligned region.

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