DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and Poxm

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster


Alignment Length:542 Identity:156/542 - (28%)
Similarity:207/542 - (38%) Gaps:211/542 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 93
            |.||||||||:|||||||..|::|||:|..|||||.||||||||||||||||.||.|||||.||.
  Fly    11 GEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA 75

  Fly    94 IGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRDAPLD 158
            |||||||:.||::.|.|.|.|:..||:|:||||::|:.||:||::..||||:|||::|.:...|.
  Fly    76 IGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLGSLG 140

  Fly   159 NDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSAS 223
            :  ....|:..|.|  :||..||..|.|..|||..:..:|                         
  Fly   141 H--QHTPGTVMGSG--SSSGGGSVSSNGGQNNGTSASNNI------------------------- 176

  Fly   224 QLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGG------ 282
                                       ||:..                      |.|||      
  Fly   177 ---------------------------NLSNL----------------------GNPGGGPHHPH 192

  Fly   283 ---------AAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVS 338
                     ||||..||.|.:.                                   :||::   
  Fly   193 HHHHHQSAAAAASAHHVHAHAH-----------------------------------AHAHL--- 219

  Fly   339 AAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYGTE 403
                                ::..|.|.:..|:|.|....|:.:|                    
  Fly   220 --------------------YNSIYQPYSAAAAYSMKTPCGSPSP-------------------- 244

  Fly   404 TETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSEE 468
                   |:......||        |.|:.|.:|.:.|.......::|.:|   .||:..|    
  Fly   245 -------PQGAGGQGSV--------PHPHQLRSVAAAAAAAHWPSSHSVSD---ILAHHQA---- 287

  Fly   469 LSAALKVESVDLIAASQSQL-YGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVT--AHQMFHP 530
                     |.|.|:.|..: .||...|.:.....|::| ..:..|:.....||..  |.|. .|
  Fly   288 ---------VALRASCQVGVGVGGMGGMGSTVSPLPMTP-SPVAGTAGGQPLLDCEGGAGQQ-SP 341

  Fly   531 YQHTPQYASYPAPGHAHSHHGH 552
            |    .|..|...|..|.||.|
  Fly   342 Y----NYYMYFQNGGMHHHHHH 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 84/124 (68%)
Homeobox 217..269 CDD:278475 2/51 (4%)
PoxmNP_001036687.1 PAX 10..133 CDD:128645 83/121 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450883
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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