DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and zen2

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster


Alignment Length:258 Identity:68/258 - (26%)
Similarity:100/258 - (38%) Gaps:69/258 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 ISDCESEPGIAL------------KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRT 250
            :||....|.:.|            ..|.:|.||.||:.||.||||.|...:|.....|.|::||.
  Fly    16 VSDLMMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRL 80

  Fly   251 NLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSS-----------LPSVVSSVP 304
            .|||.::::||.|||.:|:|  ::...||.|....|:...:.||.           |....::..
  Fly    81 ALTERQVKIWFQNRRMKLKK--STNRKGAIGALTTSIPLSSQSSEDLQKDDQIVERLLRYANTNV 143

  Fly   305 SMAPL------AMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFY 363
            ..|||      .:..|.:.|.   .|.||:      :...:..|||...|            .|.
  Fly   144 ETAPLRQVDHGVLEEGQITPP---YQSYDY------LHEFSPEPMALPQL------------PFN 187

  Fly   364 NPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRN---ESPNESVSSA 423
            ...||.||..:..|  .|.|....:: .:.||           .|.|.:|   :|.:.|.||:
  Fly   188 EFDANWASSWLGLE--PTIPIAENVI-EHNTQ-----------DQPMIQNFCWDSNSSSASSS 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 26/55 (47%)
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 26/55 (47%)
Blue background indicates that the domain is not in the aligned region.

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