DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and toe

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster


Alignment Length:602 Identity:165/602 - (27%)
Similarity:247/602 - (41%) Gaps:193/602 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TAFAAAMHRPFFNGYSTMQDMNSGQGRVNQLGGVFING---------RPLPNNIRL-----KIVE 54
            ||....:.:|.....|| ..:..|......|||:|..|         .....|:..     :::|
  Fly    75 TAATTVLAQPHSLSPST-PILTQGAPPAAALGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLE 138

  Fly    55 MAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIR-PGVIGGSKPRIATPEIENRIEEYKRSSP 118
            ::..|:|...:::.:....|.|||:|      |::| ||:||||||::|||.:.::||:|||.:|
  Fly   139 LSRFGLRGYDLAQHMLSQQGAVSKLL------GTLRPPGLIGGSKPKVATPTVVSKIEQYKRENP 197

  Fly   119 GMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRDA---------------------------- 155
            .:|:|||||:||.||||..:||||||:|:|::|.|.|                            
  Fly   198 TIFAWEIRERLITEGVCTNATAPSVSSINRILRNRAAERAAAEFARAASYGYAIHPTHPHPYTSF 262

  Fly   156 ---PLDNDMSSA-------SGSPAGDG------------------------------------TK 174
               |..:.:..|       .|.|||.|                                    |.
  Fly   263 PTWPAHHPLWGAVPLATPPGGGPAGAGGALQPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTN 327

  Fly   175 ASSSCGSDVSG-------------GHHNNGKPSDE-----DISDCESEPGIALKRKQRRCRTTFS 221
            :.|.||...:|             |..::..|..:     ||...:||...:.:.|.||.|||||
  Fly   328 SGSGCGDSSAGSGRLSLPALSPDSGSRDSRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFS 392

  Fly   222 ASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLR--------KQHTSVSGG 278
            ..||||||:.|:::.||.:.|||:||.||.|:|||:|||||||||:.|        ||..|.|  
  Fly   393 PEQLDELEKEFDKSHYPCVNTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPS-- 455

  Fly   279 APGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQ-YDFYGSH-ANISVSAAA 341
                  .|.|.....:.:.|.||.:|...|:|:      |.:..|:| |.:..|: .|.|.|::.
  Fly   456 ------TSSSPTPLVNPVVSPVSPIPVPVPVAV------PESGQQKQPYPYSTSNMCNTSSSSSN 508

  Fly   342 PMASSNLSPGI-----TTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYG 401
            ....:.::||.     |::...:.....|:|..|:         .:||.:..:|         .|
  Fly   509 SQPCNTINPGSKMSSKTSSVSSNQHMEEPAAAVAT---------ASPTASAPLS---------MG 555

  Fly   402 TETETHQTMPRNESPNESVSSAFGQLP---PTPNSLSAVVSGAGVTSSS------------GANS 451
            .|                 :|||..||   |.|.:|....:.|...|.:            ....
  Fly   556 GE-----------------NSAFRALPMTLPMPMTLPTASAAAFALSFARQYIAKYMGTPLNLGH 603

  Fly   452 GADPSQSLANASAGSEE 468
            |:.|.|:.:.....|||
  Fly   604 GSSPIQAQSGRDHQSEE 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 55/141 (39%)
Homeobox 217..269 CDD:278475 34/51 (67%)
toeNP_524041.2 HTH 134..230 CDD:304362 47/101 (47%)
Homeobox 388..440 CDD:278475 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450817
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 1 0.900 - - E1_KOG0849
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.840

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