DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and lms

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:393 Identity:102/393 - (25%)
Similarity:156/393 - (39%) Gaps:86/393 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 DMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQ 224
            |.|...|:..| .::|||...|.....:.::|| ||.|::..:.. |:...|| :|.||.|||:|
  Fly    37 DESGRGGNCLG-ASRASSPATSSCLDDNMDDGK-SDIDLASDDGN-GLGDDRK-KRPRTAFSAAQ 97

  Fly   225 LDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSH 289
            :..||..|||.:|..:..|..||::..|||.:|::||.|||.:.::::||       ......||
  Fly    98 IKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTS-------DVETLASH 155

  Fly   290 VAASSSL-----PSVVSS---VPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMAS- 345
            ..|...:     |.||..   :.|..|....|         .|.....||      .:|||||| 
  Fly   156 YYAQLGIGGLARPMVVGDRLWLFSQTPTGPTP---------IQSIMLNGS------GSAAPMASA 205

  Fly   346 -----SNLSPGITT--TPPHHHQFYNPSANTASYIMPGENGN--------TTPTGNIIVSSYETQ 395
                 |.:.|..|:  .||........||..| .:..|:..|        ..|.|.:..:||..:
  Fly   206 TTATGSPMRPYATSGGMPPLPGPSVMESARNA-ILARGQPLNFALPFGVAKPPAGGVPAASYIPR 269

  Fly   396 LGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSG-ADPSQSL 459
            ......:..:...::|.|||   .:...:..|||              .:.|||::| |:..:..
  Fly   270 CKPYATSYVDYAASLPTNES---YLQMKYATLPP--------------EAESGASNGLAELERVF 317

  Fly   460 ANASAGSEELSAALKVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVTA 524
            .:|:|.      .|:..|..:  |..:..||.....||.|...|         |.|.|:..|:..
  Fly   318 GDANAN------FLQQRSTPV--AGTATAYGHDGLNQAQRSRRP---------TQSESECSDIDC 365

  Fly   525 HQM 527
            ..:
  Fly   366 EHL 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 25/55 (45%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 25/72 (35%)
Homeodomain 87..143 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

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