DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and Poxn

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster


Alignment Length:507 Identity:143/507 - (28%)
Similarity:213/507 - (42%) Gaps:127/507 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 NSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSI 89
            ::||..||||||||:||||||:.:|.:||::|..|:|||.|||||.||||||||||.|:.|||||
  Fly     3 HTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSI 67

  Fly    90 RPGVIGGSKPR-IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 153
            |||.|||||.: :|||.:..:|...|..:.|||:|||||:|.::.|||.|:.||:|:|:|::|..
  Fly    68 RPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRNS 132

  Fly   154 DAPLDNDMSSASGSPAGDGTKASSS--CGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRC 216
            ....|...||...:.|.....|:::  .||..|.|:.....|           |.:.:       
  Fly   133 GLWTDEMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYGGQAPP-----------PPVTV------- 179

  Fly   217 RTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPG 281
                                                                          ||.
  Fly   180 --------------------------------------------------------------APP 182

  Fly   282 GAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASS 346
            ..||:.| :|..:..|:::.:.....|:...| .:.|:..:...   :|.:.|:|   ...::.|
  Fly   183 TPAATPS-IARYAKPPALMMNSAGEMPIKPAP-KMPPSMGHGHS---HGLNPNVS---GLDLSYS 239

  Fly   347 NLSPGITTTPPHHHQFYNPS-------------ANTASYIMPGENGNTTPTGNIIVSSYETQLGS 398
            .|         |.|..:|||             |.:....:|...|..........:|..:.||.
  Fly   240 AL---------HKHWLWNPSLLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGG 295

  Fly   399 VYGTETETHQTMPRNESPNESVSSA-FGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANA 462
            .  |::|:...:....:..:::|.. .|:..|...||:|...|.|..|:..|:.|:..|.|....
  Fly   296 F--TKSESSIDLSTPGAAGDALSDCDSGKSSPAALSLTASGGGNGAGSAPEASPGSTLSHSRKRN 358

  Fly   463 SAGSEEL----SAALKVESVDLIAASQSQLYGGWSSMQALRPNAP--LSPED 508
            ....|||    ...|:::|..|.....|.......|     |.||  .:|||
  Fly   359 PYSIEELLKKPEKRLRLDSNRLECLESSSCESSQDS-----PVAPPLETPED 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 77/127 (61%)
Homeobox 217..269 CDD:278475 0/51 (0%)
PoxnNP_001261016.1 HTH 5..133 CDD:304362 77/127 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451005
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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