DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Pax9

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001034628.1 Gene:Pax9 / 362741 RGDID:1560838 Length:342 Species:Rattus norvegicus


Alignment Length:448 Identity:141/448 - (31%)
Similarity:194/448 - (43%) Gaps:114/448 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 88
            |....|.||||||||:|||||||.|||:|||:|..|||||.||||||||||||||||.||.||||
  Rat     1 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65

  Fly    89 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 153
            |.||.|||||||:.||.:...|..||:..||:|:||||::|:.:||||:...||||:|||::|.:
  Rat    66 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNK 130

  Fly   154 DAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRT 218
                                     .|:....||:::.|..       :..|..||         
  Rat   131 -------------------------IGNLAQQGHYDSYKQH-------QPAPQPAL--------- 154

  Fly   219 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGA 283
                             .|..||     :..:.:|.|..:|                  ..|.|.
  Rat   155 -----------------PYNHIY-----SYPSPITAAAAKV------------------PTPPGV 179

  Fly   284 AASVSHVAASSSLPSVVSSVPSMAPLAMM--PGSLDPATVYQQQYDFYGSHANISVSAAAPMASS 346
            .|....||...:.|| ..||..:..:..:  .|..|.:..:..:.:.:.|....:.|||||.|.:
  Rat   180 PAIPGSVALPRTWPS-SHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRNNFSAAAPHAVN 243

  Fly   347 NLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLG-SVYGTETETHQTM 410
            .|..|.......:.|                    .|.|...|||:.:... :.|.|..:....|
  Rat   244 GLEKGALEQEAKYGQ--------------------APNGLPAVSSFVSASSMAPYPTPAQVSPYM 288

  Fly   411 PRNESPNESVS----SAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASA 464
            ..:.:|:..|:    ...|..|.:|::.....|    .:..|..:..:.|.|:| |||
  Rat   289 TYSAAPSGYVAGHGWQHAGSTPLSPHNCDIPTS----LAFKGMQAAREGSHSVA-ASA 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 85/126 (67%)
Homeodomain 214..270 CDD:459649 6/55 (11%)
Pax9NP_001034628.1 PAX 6..131 CDD:238076 85/149 (57%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 7..63 45/55 (82%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 82..130 23/47 (49%)
Interaction with KDM5B. /evidence=ECO:0000250 168..189 7/38 (18%)

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