DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and prrx1b

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_017207930.1 Gene:prrx1b / 337089 ZFINID:ZDB-GENE-030131-9033 Length:267 Species:Danio rerio


Alignment Length:263 Identity:86/263 - (32%)
Similarity:110/263 - (41%) Gaps:57/263 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 VCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAG--DGTKASSSCGSDVSGGHHNNGK---- 192
            |.||....|    |||.....|.|:|..:..:.|.:.  |..:|....||.|.......|:    
Zfish     8 VMDRQATIS----SRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLE 68

  Fly   193 ----PSDEDISDCESE---PGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRT 250
                .|..|.:..|:|   .....||||||.||||::|||..|||.||||.|||.:.||:||:|.
Zfish    69 SPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRV 133

  Fly   251 NLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVP---------SM 306
            ||||||:||||.||||:.|:...::..........|.|....:...|.|....|         |.
Zfish   134 NLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSA 198

  Fly   307 APLAMMP---GSLDPATVYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSAN 368
            ||.:..|   |.  |..|.|:.               .|..|:.::    |.||       ..||
Zfish   199 APYSWYPRPEGG--PMRVPQKM---------------LPTESNTMA----TYPP-------TCAN 235

  Fly   369 TAS 371
            |.|
Zfish   236 TTS 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 7/19 (37%)
Homeodomain 214..270 CDD:459649 38/55 (69%)
prrx1bXP_017207930.1 Homeodomain 101..153 CDD:459649 35/51 (69%)
OAR 242..259 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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