DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Pph13

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster


Alignment Length:416 Identity:118/416 - (28%)
Similarity:157/416 - (37%) Gaps:146/416 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 LKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHT 273
            :||||||.||||:..||.||||||:||.|||::.|||||.|.:|||||:||||.||||:.|||..
  Fly     6 MKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 70

  Fly   274 SVSGGAPG----GAA---ASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDF--- 328
              .||..|    ||.   .|....|....|.|.:..          .|:|.|.|..|.....   
  Fly    71 --IGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGG----------GGTLLPDTPPQSSNSLDNE 123

  Fly   329 ----YGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIV 389
                ||:.|         |:.|.|||.|         |.|.:.:....    |.|     |:.:.
  Fly   124 LKASYGTGA---------MSPSRLSPNI---------FLNLNIDHLGL----ERG-----GSGLS 161

  Fly   390 SSYETQLGSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSS------- 447
            ..:.|     |..:|:. ||.|:.:|.|:     ..|.||..::...:.:|    |||       
  Fly   162 MEWST-----YPPQTQA-QTHPQMDSDNQ-----LQQHPPQQHASDPIHAG----SSSHHQQQQQ 211

  Fly   448 -------------GANSGADPSQSLANASAGSEELSAALKVESVDL---------------IAAS 484
                         |....|..|..:.:.|:..:|    :|..|||:               :..|
  Fly   212 QHQQEQHNPQLHPGLEFAASLSLDMTDGSSAYDE----MKFLSVDVDQFTIDSFKADCILSMEQS 272

  Fly   485 QSQLYGGWS-------------------SMQALRPNAP---LSPEDSLNSTSSTSQALDVTAHQM 527
            |.|.|||.|                   .|:...|.:|   |..:.||.|.|...:.:.....|:
  Fly   273 QMQAYGGHSQLVGSSNELCLDGIGMSSFGMEEGEPKSPPSLLVLDKSLPSLSIGVEGIADLVEQL 337

  Fly   528 FHPYQHTPQYASYPAPGHAHSHHGHP 553
            .|                 |.|.|.|
  Fly   338 HH-----------------HQHEGGP 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeobox 217..269 CDD:278475 36/51 (71%)
Pph13NP_477330.1 Homeobox 14..66 CDD:278475 36/51 (71%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450985
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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