DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and CG11294

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_572500.1 Gene:CG11294 / 31807 FlyBaseID:FBgn0030058 Length:261 Species:Drosophila melanogaster


Alignment Length:160 Identity:59/160 - (36%)
Similarity:81/160 - (50%) Gaps:45/160 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 PGIAL------KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSN 263
            ||..|      :|:|||.||||:..||.|||..|::|.|||::.|||:|.|.:|:|||:||||.|
  Fly    10 PGDLLTEYMFGRRRQRRNRTTFTPQQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQN 74

  Fly   264 RRARLRKQHT------------------------SVSGGAPGGAAA--------SVSHVAASSSL 296
            |||:.|||..                        :|.||:..||.|        ::|..:..|.|
  Fly    75 RRAKWRKQARLQLLQDAWRMRCLSLGTPPVMGGGAVQGGSGNGATARPPSQTPENLSSASKDSEL 139

  Fly   297 PSVVSSVPSMAPLAMMPGSLDPATVYQQQY 326
             :.|.:.|:.....||    .||  :|||:
  Fly   140 -AEVGNGPNSGSFTMM----HPA--FQQQH 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 33/55 (60%)
CG11294NP_572500.1 Homeodomain 29..81 CDD:459649 30/51 (59%)
Blue background indicates that the domain is not in the aligned region.

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