DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Gsc

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001178802.1 Gene:Gsc / 317715 RGDID:631425 Length:256 Species:Rattus norvegicus


Alignment Length:66 Identity:33/66 - (50%)
Similarity:49/66 - (74%) Gaps:0/66 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 RKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSV 275
            |::||.||.|:..||:.||..|:.|:|||:.|||:||::.:|.|.:::|||.||||:.|:|..|.
  Rat   158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSS 222

  Fly   276 S 276
            |
  Rat   223 S 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 28/55 (51%)
GscNP_001178802.1 Homeodomain 161..217 CDD:459649 28/55 (51%)
Blue background indicates that the domain is not in the aligned region.

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