DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Vsx1

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster


Alignment Length:440 Identity:107/440 - (24%)
Similarity:153/440 - (34%) Gaps:133/440 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 ASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDEL 228
            |:|...|:.....::.|.||..|....|             ||...|.|:|..||.|::|||:||
  Fly   359 AAGGAGGNPNSLLAAHGGDVLVGPGGTG-------------PGGKKKNKRRHGRTIFTSSQLEEL 410

  Fly   229 ERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHT----SVSGGAPGGAAASVSH 289
            |:||:...|||:..||.|:.:|.|.|.|||||:.||||:.||...    |......|...|.|.|
  Fly   411 EKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRH 475

  Fly   290 VAASSSLP---SVVSSV---PSMAP--LAMMPGSLDPATVYQQQYDF----YGSHANISVSAA-- 340
                 |||   :::.|.   .|:||  |.|...||:.|.:.:.....    .....|.|.||.  
  Fly   476 -----SLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSYSAGST 535

  Fly   341 --APMASSNLSPGITTTPP----------HHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYE 393
              :|::|.::|..:...||          |||..::...:..:::                    
  Fly   536 HNSPISSFSISRLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHV-------------------- 580

  Fly   394 TQLGSVYGTETETHQTM----PRNESPNESVSSAFGQLPPTPNSL-SAVVSGAGVTSSSGANSGA 453
                   ..:.:.|..|    .:.:...:........|....||| ...|:|.|..|.||:.|| 
  Fly   581 -------HAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGSG- 637

  Fly   454 DPSQSLANASAGSEELSAALKVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQ 518
                    ..|||....|                             :.|.:.:..|        
  Fly   638 --------TGAGSTGPPA-----------------------------HHPYNQQQHL-------- 657

  Fly   519 ALDVTAHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAG 568
                  |.:....|...|..........|.||.|.|:.| |.|.|...||
  Fly   658 ------HHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVH-HMHHHNAAAG 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeobox 217..269 CDD:278475 29/51 (57%)
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 29/51 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450960
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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