DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Vsx1

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster


Alignment Length:440 Identity:107/440 - (24%)
Similarity:153/440 - (34%) Gaps:133/440 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 ASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDEL 228
            |:|...|:.....::.|.||..|....|             ||...|.|:|..||.|::|||:||
  Fly   359 AAGGAGGNPNSLLAAHGGDVLVGPGGTG-------------PGGKKKNKRRHGRTIFTSSQLEEL 410

  Fly   229 ERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHT----SVSGGAPGGAAASVSH 289
            |:||:...|||:..||.|:.:|.|.|.|||||:.||||:.||...    |......|...|.|.|
  Fly   411 EKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRH 475

  Fly   290 VAASSSLP---SVVSSV---PSMAP--LAMMPGSLDPATVYQQQYDF----YGSHANISVSAA-- 340
                 |||   :::.|.   .|:||  |.|...||:.|.:.:.....    .....|.|.||.  
  Fly   476 -----SLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSYSAGST 535

  Fly   341 --APMASSNLSPGITTTPP----------HHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYE 393
              :|::|.::|..:...||          |||..::...:..:::                    
  Fly   536 HNSPISSFSISRLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHV-------------------- 580

  Fly   394 TQLGSVYGTETETHQTM----PRNESPNESVSSAFGQLPPTPNSL-SAVVSGAGVTSSSGANSGA 453
                   ..:.:.|..|    .:.:...:........|....||| ...|:|.|..|.||:.|| 
  Fly   581 -------HAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGSG- 637

  Fly   454 DPSQSLANASAGSEELSAALKVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQ 518
                    ..|||....|                             :.|.:.:..|        
  Fly   638 --------TGAGSTGPPA-----------------------------HHPYNQQQHL-------- 657

  Fly   519 ALDVTAHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAG 568
                  |.:....|...|..........|.||.|.|:.| |.|.|...||
  Fly   658 ------HHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVH-HMHHHNAAAG 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 30/55 (55%)
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 30/56 (54%)
Blue background indicates that the domain is not in the aligned region.

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