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Protein Alignment prd and arxa

DIOPT Version :9

Sequence 1:	NP_723721.1	Gene:	prd / 34629	FlyBaseID:	FBgn0003145	Length:	613	Species:	Drosophila melanogaster
Sequence 2:	NP_571459.1	Gene:	arxa / 30657	ZFINID:	ZDB-GENE-990415-15	Length:	453	Species:	Danio rerio

Alignment Length:	488	Identity:	143/488 - (29%)
Similarity:	203/488 - (41%)	Gaps:	146/488 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly    62 PCVISRQLRVSHGCVSKILNR-----YQETGS------IRPGVIGGSKPRIATPEI---ENRIE- 111
            |.|:|..      |:..||.|     .::.|:      :||       ....|.|:   ||..:
Zfish    20 PTVLSSY------CIDSILGRRSPCKVRQLGAQSLPAPVRP-------DHEMTTEVTSKENSFDS 71

  Fly   112 ----------------EYKRSSPGMFSWEIREKLIREGVCDR-------STAPSVSAISRLVRGR 153
                            :|..|..|..  |..||..||.:.|:       |.||.|| |||....|
Zfish    72 DMHLPPKLRRLYGPGGKYLDSGRGFH--EHLEKGERERLLDQACESLKISQAPQVS-ISRSKSYR 133

  Fly   154 D-APLDNDMSSASGSP---AGDGTKASS-----------SCGSDV-----SGGHHNNGKPSDEDI 198
            : ||.  ..|....||   |.:..:.|:           :||.:.     ....||:|...|.:.
Zfish   134 ENAPF--SQSDEGQSPEHMAQELVELSTLKFEEDVVKEEACGDNSLSPKDEESLHNDGDVKDGED 196

  Fly   199 SDC-----ESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 258
            |.|     :||.|: |||||||.||||::.||:||||||::|.|||::||||||.|.:|||||:|
Zfish   197 SVCLSAGSDSEEGM-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 260

  Fly   259 VWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQ 323
            |||.||||:.||:..:.....|.|                    :|...|||    :..|.:.|.
Zfish   261 VWFQNRRAKWRKREKAGVQAHPTG--------------------LPFPGPLA----AAHPLSHYL 301

  Fly   324 QQYDFYGSHANISVSAA--APMASSNLSPGITTTPPHHHQFYNPSA--------NTASYIMPGEN 378
            :...| ..|.:.::.:|  |..|::...||:  .||.:.....|:.        .||.:..|...
Zfish   302 EGGPF-PPHPHPALESAWTAAAAAAAAFPGL--APPPNSSALPPATPLGLGTFLGTAMFRHPAFI 363

  Fly   379 GNTTPTGNIIVSSYETQLGSVYGTETET---HQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSG 440
            |   ||...:.||    :|.:....|..   .||.|..|||.:..::    ||..|:|
Zfish   364 G---PTFGRLFSS----MGPLTSASTAAALLRQTAPPVESPVQPSAA----LPEPPSS------- 410

  Fly   441 AGVTSSSGANSGADPSQSLANASAGSEELSAAL 473
               :||:.|:..|   .|:|.....::|.||.|
Zfish   411 ---SSSTAADRRA---SSIAALRLKAKEHSAQL 437

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.