DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and otx1

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_571325.2 Gene:otx1 / 30500 ZFINID:ZDB-GENE-980526-400 Length:323 Species:Danio rerio


Alignment Length:427 Identity:105/427 - (24%)
Similarity:140/427 - (32%) Gaps:199/427 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 GSDVSGG-----HHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPD 239
            |..:||.     |.:.|.|              |..|||||.||||:.||||.||..|.:|:|||
Zfish    14 GLGLSGAAMDLLHPSVGYP--------------ATPRKQRRERTTFTRSQLDILEALFAKTRYPD 64

  Fly   240 IYTREELAQRTNLTEARIQVWFSNRRARLRKQHTS------------------------------ 274
            |:.|||:|.:.||.|:|:||||.||||:.|:|..|                              
Zfish    65 IFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSSTKTRPAKKKSSPTRESTGSESSGQFTP 129

  Fly   275 ---VSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANIS 336
               .|.|:...:::|.::....|:..| :|:|.|:...|:.|||..|                 |
Zfish   130 PAVSSAGSSSSSSSSTNNTGICSTSTS-ISTVSSIWSPAISPGSAPP-----------------S 176

  Fly   337 VSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYG 401
            ||...|:|.||.|                                            ....||.|
Zfish   177 VSLPEPVAPSNTS--------------------------------------------CMQRSVSG 197

  Fly   402 TETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGS 466
            |.:.|: .||.|:      ::.:.|..|||              |....||.|....|       
Zfish   198 TASSTY-PMPYNQ------TTGYSQGYPTP--------------SGSYFSGVDCGSYL------- 234

  Fly   467 EELSAALKVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVTAHQMFHPY 531
                                               ||:                    |...||:
Zfish   235 -----------------------------------APM--------------------HSHHHPH 244

  Fly   532 QHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAG 568
            |.:|..|| ..|.|.| ||....:.|.|.|.|..|:|
Zfish   245 QLSPMTAS-SMPTHPH-HHISQSSGHHHHHHHQAYSG 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 34/55 (62%)
otx1NP_571325.2 Homeodomain 39..95 CDD:459649 34/55 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..155 8/63 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 168..204 17/97 (18%)
TF_Otx 172..258 CDD:427350 37/230 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..277 15/39 (38%)
Blue background indicates that the domain is not in the aligned region.

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