DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and rx1

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_571300.2 Gene:rx1 / 30472 ZFINID:ZDB-GENE-990415-236 Length:330 Species:Danio rerio


Alignment Length:303 Identity:89/303 - (29%)
Similarity:130/303 - (42%) Gaps:87/303 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 NRYQETGSIRPGV------IGGSKPRIATP-EIENRIEEYKRSSPGMFSWEIREKLIREGVCDRS 138
            |:.|:: .:.||.      :||..  :..| :::.|::.|....|           :|:|    |
Zfish    46 NKDQDS-LLNPGANAVAHKVGGES--LGEPGKLDQRVQPYGHLPP-----------LRDG----S 92

  Fly   139 TAPSVSAISRLVRGRDAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCES 203
            ..|:..             |.||             .|:.|..|:.    :..|..:.|....:|
Zfish    93 EQPTFH-------------DADM-------------FSNKCDGDLG----DLRKAIESDSKSPDS 127

  Fly   204 EPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARL 268
            ..|...|:|.||.||||:..||.|||||||::.|||:|:|||||.:.||.|.|:||||.||||:.
Zfish   128 ADGEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKW 192

  Fly   269 RKQ----------HTS--VSGGAPGGAAASVSHVAA---SSSLPS---VVSSVPSMAPLAMMPGS 315
            |:|          |.|  :|...|.      .|...   ::|||.   :.|.:.|..|:..:||.
Zfish   193 RRQEKIDASTMKLHDSPMLSFNRPS------MHPTVGPMNNSLPLDPWLPSPLSSATPVHSIPGF 251

  Fly   316 LDPATVYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPH 358
            :.|....|..|.   .|:  .:|...|||.| :.|  ...||:
Zfish   252 MGPTQGLQTGYP---GHS--FLSPPQPMAQS-MQP--MAPPPY 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 14/79 (18%)
Homeodomain 214..270 CDD:459649 36/55 (65%)
rx1NP_571300.2 Octapeptide motif 37..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 66..104 12/80 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 118..142 7/23 (30%)
Homeodomain 138..194 CDD:459649 36/55 (65%)
OAR 302..318 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Nuclear localization signal. /evidence=ECO:0000255 312..316
Blue background indicates that the domain is not in the aligned region.

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