DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and pax2a

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_021336168.1 Gene:pax2a / 30425 ZFINID:ZDB-GENE-990415-8 Length:519 Species:Danio rerio


Alignment Length:483 Identity:164/483 - (33%)
Similarity:218/483 - (45%) Gaps:133/483 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 YSTMQDMNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILN- 81
            :|.|...:.|.|.||||||||:||||||:.:|.:|||:|..|:|||.||||||||||||||||. 
Zfish    10 FSAMHLSHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGS 74

  Fly    82 ------RYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTA 140
                  ||.|||||:|||||||||::|||::..:|.||||.:|.||:||||::|:.|||||..|.
Zfish    75 YQKDLIRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTV 139

  Fly   141 PSVSAISRLVR------------GRDAPLDN-----------------------------DMSSA 164
            ||||:|:|::|            |...||..                             .:|||
Zfish   140 PSVSSINRIIRTKVQQPFHPSSDGTGTPLSTAGHTIGDLESTPYTLTYSCALSVPSTASPPVSSA 204

  Fly   165 SGSPAG-------------DGTKASSSCGSDVS-GGHHNNGKP-----SDEDISDCESEPGIALK 210
            |..|.|             :|.|...   .||. .|:|.:|:.     ||....:.:|:..:...
Zfish   205 SNDPVGSYSINGILGIPRSNGEKRKR---DDVLWSGNHLDGRKIGYYGSDGSGPNSDSQGSVESL 266

  Fly   211 RKQRRCRTTFSASQLDELERAFERTQYPDIY-TREEL-----------AQRTNLTEARIQVWFSN 263
            ||..|. ..|:..||:.|:|.|||..|||:: |.|.:           |....|.|.:..:    
Zfish   267 RKHLRA-DAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPALNPGLDEVKPSL---- 326

  Fly   264 RRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLA-MMPGS-----------L 316
                    .||||.......:.|...|..|.|....|...|..|.|| ..|.|           |
Zfish   327 --------STSVSSDLGSSVSQSYPVVTESHSSSMCVKQEPHEASLAPFTPSSLAVSGLAELLPL 383

  Fly   317 DPATVYQQQYDFYGSHANISVS----------AAAPMASSNLSPGITTTPPHHHQFYNPSANTAS 371
            .|:.........||::|:.:.|          |...|||:.| ||.   |||     .|.....|
Zfish   384 QPSVSVDASTPCYGAYAHHAPSYCQYTSQHIIAGREMASTTL-PGY---PPH-----VPPTGQGS 439

  Fly   372 Y-------IMPGENGNTTPTGNIIVSSY 392
            |       ::||.:.:..|..:...::|
Zfish   440 YPTSTLAGMVPGSDFSGNPYSHPQYTTY 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 87/145 (60%)
Homeobox 217..269 CDD:278475 16/63 (25%)
pax2aXP_021336168.1 PAX 19..150 CDD:128645 85/130 (65%)
Pax2_C 391..500 CDD:315141 21/86 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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