DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Alx4

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001100023.1 Gene:Alx4 / 296511 RGDID:1310201 Length:399 Species:Rattus norvegicus


Alignment Length:246 Identity:80/246 - (32%)
Similarity:111/246 - (45%) Gaps:64/246 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 LDNDMSSASGSPAGDGTKA-SSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTF 220
            :||...|...:    |.|. ....|:::         ||..:.:|.||..|     |:||.||||
  Rat   163 MDNSYLSVKET----GAKGPQDRAGAEI---------PSPLEKTDSESSKG-----KKRRNRTTF 209

  Fly   221 SASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ-----------HTS 274
            ::.||:|||:.|::|.|||:|.||:||.||:|||||:||||.||||:.||:           |.|
  Rat   210 TSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFS 274

  Fly   275 VSGGAPGGAAAS----------VSHVAASSSLPSVVSSVP-SMAPLAMMPGSLDPATVYQQQYDF 328
            .:...|....|.          :.:..|:|.:|:.|  || ...|..|.|.:..|.:......||
  Rat   275 TAYELPLLTRAENYAQIQNPSWIGNNGAASPVPACV--VPCDPVPACMSPHAHPPGSGASSVSDF 337

  Fly   329 YGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENG 379
                  :|||.|.               .|..|.:..|...|:.|.||.||
  Rat   338 ------LSVSGAG---------------SHVGQTHMGSLFGAAGISPGLNG 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 36/55 (65%)
Alx4NP_001100023.1 Homeodomain 203..259 CDD:459649 36/55 (65%)
OAR 375..393 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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