DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Prrx2

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_006497869.1 Gene:Prrx2 / 20204 MGIID:98218 Length:259 Species:Mus musculus


Alignment Length:243 Identity:78/243 - (32%)
Similarity:106/243 - (43%) Gaps:53/243 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 LDNDMSSASG----SPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKR--KQRR 215
            ||.:..:|:|    .|.....:|......:.|||  ::|..:.....||.| ||...||  ||||
Mouse    39 LDLEEVAAAGRRAAGPVSGPAEAREGAAREPSGG--SSGSEAAPQDGDCPS-PGRGTKRKKKQRR 100

  Fly   216 CRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARI------------QVWFSNRRARL 268
            .||||::|||..|||.||||.|||.:.|||||:|.||:|||:            ||||.||||:.
Mouse   101 NRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQSTRPCSPHSPSQVWFQNRRAKF 165

  Fly   269 RKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHA 333
            |:...::..            ..::|.|.|.........|:|..|.::.|     ....:..|..
Mouse   166 RRNERAMLA------------TRSASLLKSYGQEAAIEQPVAPRPTTMSP-----DYLSWPASSP 213

  Fly   334 NISVSAAAPMASSNLSPGITTTPP-------------HHHQFYNPSAN 368
            ..||...:|..||..:||:.....             ||.|.  |:.|
Mouse   214 YSSVPPYSPGGSSPATPGVNMANSIASLRLKAKEFSLHHSQV--PTVN 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 38/67 (57%)
Prrx2XP_006497869.1 Homeodomain 103..167 CDD:459649 35/63 (56%)
OAR 233..249 CDD:461067 0/15 (0%)
Blue background indicates that the domain is not in the aligned region.

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