DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Rax

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_038861.2 Gene:Rax / 19434 MGIID:109632 Length:342 Species:Mus musculus


Alignment Length:345 Identity:103/345 - (29%)
Similarity:133/345 - (38%) Gaps:77/345 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 SPGMF--SWEIREKLIREGVCDRSTAPSVSAISRLVRGRDAPLDN---DMSSASGSPAGDGTKAS 176
            :|.|.  |:.:...|:|......|...|:.||....: .|..||.   :.||.|.........|.
Mouse     7 APAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTK-EDGILDTFPAERSSRSSKERDPRLGAQ 70

  Fly   177 SSCGSDVSGGHHNNGK------PSDEDISDC--------ESEPGIAL---------------KRK 212
            .:|....:||..::..      |..|....|        ...||:::               |:|
Mouse    71 PACPKAPAGGSESSPPAAPGFVPEYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSEEEPPKKK 135

  Fly   213 QRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQH-TSVS 276
            .||.||||:..||.|||||||::.|||:|:|||||.:.||.|.|:||||.||||:.|:|. ..||
Mouse   136 HRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVS 200

  Fly   277 GGAPGGAAASVSHVAASSSLPSVVSSVPS--MAPLAMMPGSLDPATVYQQQYDFYGSHANISVSA 339
                       |.....|.|.|...|.||  :|||...|||              ||....|...
Mouse   201 -----------SMKLQDSPLLSFSRSPPSSALAPLGTGPGS--------------GSGPPGSALP 240

  Fly   340 AAPMASSNLSPGITTTPPHHHQFYNPSAN-TASYIMPGENGNTTPTGNIIVSSYETQLG------ 397
            ..|.....|..|..|.......|..|... .|||..|....|:.|.|..:     .|||      
Mouse   241 LEPWLGPPLPGGGATALQSLPGFGPPGQGLPASYTPPPPFLNSAPLGPGL-----QQLGPPPAYP 300

  Fly   398 --SVYGTETETHQTMPRNES 415
              ..:|.:....:..|||.|
Mouse   301 CAPAFGDKFSLEEAYPRNSS 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 9/38 (24%)
Homeodomain 214..270 CDD:459649 36/55 (65%)
RaxNP_038861.2 Octapeptide motif 33..40 3/6 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..140 19/95 (20%)
Homeodomain 137..193 CDD:459649 36/55 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..295 29/105 (28%)
OAR 316..331 CDD:461067 4/5 (80%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 319..332 1/2 (50%)
Nuclear localization signal. /evidence=ECO:0000255 325..329
Blue background indicates that the domain is not in the aligned region.

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