DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and npax-2

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_508396.3 Gene:npax-2 / 185967 WormBaseID:WBGene00018591 Length:233 Species:Caenorhabditis elegans


Alignment Length:173 Identity:64/173 - (36%)
Similarity:90/173 - (52%) Gaps:33/173 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AFAAAMHRPFFNGYSTMQDMNS-------------------------GQGRVNQLGGVFINGRPL 44
            ||.|.|:.|::  |....|..|                         ..|| ||||..:..|.||
 Worm    53 AFEAGMYNPYY--YPDTSDSGSPSSLSCSSLDYDVPPPPQYEKDVARSSGR-NQLGRTYSPGLPL 114

  Fly    45 PNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENR 109
            ....|.:||::...|.:.|.||::|.|:|.|||||||||::|||::|.  ...:.|..:| :...
 Worm   115 SMCEREEIVKLFQGGWKICDISKRLCVTHSCVSKILNRYRQTGSVKPK--DAKEGRTESP-LVLA 176

  Fly   110 IEEYKRSSPGMF-SWEIREKLIREGVCDRSTAPSVSAISRLVR 151
            :.:| ||..||. ..||||:|||:|||.|..|||.|:|:.::|
 Worm   177 VRDY-RSRLGMCRQSEIREQLIRDGVCTRDNAPSRSSINHILR 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 56/126 (44%)
Homeobox 217..269 CDD:278475
npax-2NP_508396.3 PAX 97..218 CDD:128645 55/125 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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