DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and Pax8

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_035170.1 Gene:Pax8 / 18510 MGIID:97492 Length:457 Species:Mus musculus


Alignment Length:600 Identity:174/600 - (28%)
Similarity:246/600 - (41%) Gaps:195/600 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 88
            :.||.|.:|||||.|:||||||..:|.:||::|..|:|||.||||||||||||||||.||.||||
Mouse     6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 70

  Fly    89 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 153
            |||||||||||::|||::..:|.:|||.:|.||:||||::|:.|||||..|.||||:|:|::|.:
Mouse    71 IRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135

  Fly   154 -----DAPLDNDMSSASGSP----------AGDGTKASSSCGS--DVSG-------GHHNNGKPS 194
                 :.|:|:.:::.|.||          ....:..|.|.||  .::|       |:.|..|..
Mouse   136 VQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGNDNKRKMD 200

  Fly   195 DEDISDC----ESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEA 255
            |.|...|    :|:...:..||..| ..|||...|:.||..|||..||:.|              
Mouse   201 DSDQDSCRLSIDSQSSSSGPRKHLR-TDTFSQHHLEALECPFERQHYPEAY-------------- 250

  Fly   256 RIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPAT 320
                                         ||.||......|          .||.::..:||   
Mouse   251 -----------------------------ASPSHTKGEQGL----------YPLPLLNSALD--- 273

  Fly   321 VYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTG 385
                             ...|.:.|||                                  ||.|
Mouse   274 -----------------DGKATLTSSN----------------------------------TPLG 287

  Fly   386 NIIVSSYETQLGSVYGTETETHQTMP-----------RNESPNESVSSAFGQLPPTPNSL--SAV 437
            .                ...||||.|           :.|:|..|.||:      ||:||  ||.
Mouse   288 R----------------NLSTHQTYPVVADPHSPFAIKQETPELSSSSS------TPSSLSSSAF 330

  Fly   438 VSGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIAASQSQLYGGWSSMQALRPNA 502
            :....|.|...|.:...|..:..:|::...:.:....:...:::.          .::....|:.
Mouse   331 LDLQQVGSGGPAGASVPPFNAFPHAASVYGQFTGQALLSGREMVG----------PTLPGYPPHI 385

  Fly   503 PLSPEDSLNSTSSTSQALDVTAHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQY- 566
            |.|.:.|.  .||....:...:....:.|.||| |:||....         ..|:......|.| 
Mouse   386 PTSGQGSY--ASSAIAGMVAGSEYSGNAYSHTP-YSSYSEAW---------RFPNSSLLSSPYYY 438

  Fly   567 -AGAHPHYPPPSSSA 580
             :.:.|..||.|::|
Mouse   439 SSTSRPSAPPTSATA 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 83/131 (63%)
Homeobox 217..269 CDD:278475 12/51 (24%)
Pax8NP_035170.1 PAX 9..133 CDD:128645 82/123 (67%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68 38/55 (69%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 25/47 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..224 14/64 (22%)
Pax2_C 344..455 CDD:372091 22/131 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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