DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Pax6

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_038655.1 Gene:Pax6 / 18508 MGIID:97490 Length:436 Species:Mus musculus


Alignment Length:498 Identity:182/498 - (36%)
Similarity:242/498 - (48%) Gaps:124/498 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 MQDMNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLR--------------V 71
            ||:.:||   ||||||||:||||||::.|.||||:|..|.|||.|||.|:              |
Mouse     1 MQNSHSG---VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENV 62

  Fly    72 SHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCD 136
            |:|||||||.||.|||||||..|||||||:||||:.::|.:|||..|.:|:||||::|:.||||.
Mouse    63 SNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCT 127

  Fly   137 RSTAPSVSAISRLVR---------GRDAPLD-----NDMSSASGSPAG-------DGTKASSSCG 180
            ....||||:|:|::|         |.|...|     |..:.:.|:..|       .|......|.
Mouse   128 NDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQ 192

  Fly   181 SDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREE 245
            ....||.:.|...|:.:.|| |::..:.||||.:|.||:|:..|::.||:.||||.|||::.||.
Mouse   193 QQEGGGENTNSISSNGEDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARER 256

  Fly   246 LAQRTNLTEARIQVWFSNRRA------RLRKQHTSVSGGAPGGAAASVSHVAASSS--------L 296
            ||.:.:|.|||||||||||||      :||.|....|.        :.||:..|||        :
Mouse   257 LAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASN--------TPSHIPISSSFSTSVYQPI 313

  Fly   297 PSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQ 361
            |...:.|.|....:|: |..|.|...             :.||..||.|..::..:...||...|
Mouse   314 PQPTTPVSSFTSGSML-GRTDTALTN-------------TYSALPPMPSFTMANNLPMQPPVPSQ 364

  Fly   362 FYNPSANTASY--IMPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRNESPNESVSSAF 424
                   |:||  ::|     |:|:.|          |..|.|.|..|.....|..|        
Mouse   365 -------TSSYSCMLP-----TSPSVN----------GRSYDTYTPPHMQTHMNSQP-------- 399

  Fly   425 GQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSE 467
                          .|...|:|:|..|   |..|:.....|||
Mouse   400 --------------MGTSGTTSTGLIS---PGVSVPVQVPGSE 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 81/149 (54%)
Homeodomain 214..270 CDD:459649 33/61 (54%)
Pax6NP_038655.1 PAX 4..142 CDD:128645 80/140 (57%)
Homeodomain 226..281 CDD:459649 32/54 (59%)

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