DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and Pax2

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001355672.1 Gene:Pax2 / 18504 MGIID:97486 Length:432 Species:Mus musculus


Alignment Length:470 Identity:157/470 - (33%)
Similarity:214/470 - (45%) Gaps:151/470 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 88
            |:.|.|.||||||||:||||||:.:|.:|||:|..|:|||.||||||||||||||||.||.||||
Mouse    13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77

  Fly    89 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR-- 151
            |:|||||||||::|||::.::|.||||.:|.||:||||::|:.||:||..|.||||:|:|::|  
Mouse    78 IKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTK 142

  Fly   152 --------------GRDAP--------LDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKP- 193
                          |..||        ....:||||..|.|      |...:.:.|...:||:. 
Mouse   143 VQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG------SYSINGILGIPRSNGEKR 201

  Fly   194 -----------------------------SDEDISDCESEPGIALKRKQRRCRTTFSASQLDELE 229
                                         |:..:.:.:|:.|:...||..|. .||:..||:.|:
Mouse   202 KREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALD 265

  Fly   230 RAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASS 294
            |.|||..|||::...|                                           |:.:..
Mouse   266 RVFERPSYPDVFQASE-------------------------------------------HIKSEQ 287

  Fly   295 ----SLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAA-PMASSNLSPGITT 354
                |||            |:.|| ||              ....|:||:| |...||:| |..|
Mouse   288 GNEYSLP------------ALTPG-LD--------------EVKSSLSASANPELGSNVS-GTQT 324

  Fly   355 TPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQ--LGSVYGTE-TETHQTMPRNESP 416
            .|      .....:..|..:||...:..|||.   .||.|.  .|.|.|:| :....:.|:..:.
Mouse   325 YP------VVTGRDMTSTTLPGYPPHVPPTGQ---GSYPTSTLAGMVPGSEFSGNPYSHPQYTAY 380

  Fly   417 NES--VSSAFGQLPP 429
            ||:  .|:....:||
Mouse   381 NEAWRFSNPALLMPP 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 86/142 (61%)
Homeobox 217..269 CDD:278475 13/51 (25%)
Pax2NP_001355672.1 PAX 16..140 CDD:128645 84/123 (68%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 19..75 41/55 (75%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 94..142 25/47 (53%)
homeodomain 255..>278 CDD:381795 12/22 (55%)
Pax2_C 305..>390 CDD:372091 28/94 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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