DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and npax-1

DIOPT Version :9

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_495533.2 Gene:npax-1 / 184779 WormBaseID:WBGene00017664 Length:176 Species:Caenorhabditis elegans


Alignment Length:125 Identity:40/125 - (32%)
Similarity:60/125 - (48%) Gaps:29/125 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 STMQDMNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRY 83
            ||..::|.|: :|..:|..:..||||....|.|||.:..:|.|...|:|.:.|:|.|||||::||
 Worm    49 STSPEINEGE-KVKAVGRSYNPGRPLCLEDRKKIVRLYEEGCRVSHIARLIGVTHSCVSKIMSRY 112

  Fly    84 QETGSIRPGVIGGS----------------------KP------RIATPEIENRIEEYKR 115
            :.|||::|.....:                      ||      ||.:|:|:..|..|.|
 Worm   113 RRTGSVQPRSFRATENQENDNATWQQQQLKQQQKKEKPLPFSIERILSPDIKKEIGTYPR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 37/117 (32%)
Homeobox 217..269 CDD:278475
npax-1NP_495533.2 HTH 60..>122 CDD:389747 27/61 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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