DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prd and Sebox

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_032785.1 Gene:Sebox / 18292 MGIID:108012 Length:190 Species:Mus musculus


Alignment Length:206 Identity:70/206 - (33%)
Similarity:90/206 - (43%) Gaps:39/206 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 SDCESEPGIAL-KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFS 262
            |..|:.||.|. ....||.|||||..||.||||.|....||||.|||.|||.|:|.||:|||||.
Mouse     3 SPVEASPGCASGLGPHRRKRTTFSVGQLVELERVFAARPYPDISTREHLAQVTHLPEAKIQVWFQ 67

  Fly   263 NRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGS----LDPATVYQ 323
            ||||:..|..      .||...:.:       .||....|:|....|...||:    |.|.:..|
Mouse    68 NRRAKRIKDR------KPGALNSRL-------ELPPNSCSLPDTPQLPWDPGTSSHPLHPTSSAQ 119

  Fly   324 QQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNII 388
                 |.|......|...|:    |.||         |.::.:...|.:...|.:|..:....|:
Mouse   120 -----YTSACPPQTSCLGPI----LGPG---------QSWSGAKVAAPWGTSGASGIHSSLEQIV 166

  Fly   389 VSSYETQLGSV 399
            .   :|.||::
Mouse   167 P---QTSLGNL 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 37/55 (67%)
SeboxNP_032785.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 5/16 (31%)
Homeodomain 19..72 CDD:459649 36/52 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..123 13/64 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.