Protein Alignment prd and vab-3

DIOPT Version :10

• Sequence 1: NP_723721.1
• Gene: prd / 34629
• FlyBaseID: FBgn0003145
• Length: 613
• Species: Drosophila melanogaster
• Sequence 2: NP_001024570.1
• Gene: vab-3 / 181251
• WormBaseID: WBGene00006870
• Length: 455
• Species: Caenorhabditis elegans
• Alignment Length: 464
• Identity: 160/464 - (34%)
• Similarity: 229/464 - (49%)
• Gaps: 104/464 - (22%)

  Fly    25 NSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSI 89
            ::|...||||||||:||||||:..|.:||::|..|.|||.|||.|:||:|||||||.||.|:|:|
 Worm     3 DAGHTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESGTI 67

  Fly    90 RPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRD 154
            ||..|||||||:||.::..:||:|||..|.:|:||||:||:.:.:|:..|.||||:|:|::|...
 Worm    68 RPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSINRVLRNLA 132

  Fly   155 AP----------------LDN-------------DMSSASG----------SPAGDGTKASSSCG 180
            |.                :||             .|:.|.|          .|..:|.....
 Worm   133 AKKEQVTMQTELYDRIRIVDNFPYNSSWYGQWPIPMNGAVGLNPFVPAPLIEPKTEGEFEKD--- 194

  Fly   181 SDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREE 245
                    .:.||..|...|..:.  :.||||.:|.||:|:..|::.||:.||||.|||::.||.
 Worm   195 --------EDQKPPTEPEDDAAAR--MRLKRKLQRNRTSFTQVQIESLEKEFERTHYPDVFARER 249

  Fly   246 LAQRTNLTEARIQVWFSNRRARLRKQH------------TSVSGGAPGGAAASVSHVAASSSLPS 298
            |||:..|.|||||||||||||:.|::.            :|:|.|.|.....||:....::.:.|
 Worm   250 LAQKIQLPEARIQVWFSNRRAKWRREEKMRNKRSSGTMDSSLSNGTPTPTPGSVTGSNMTNPIGS 314

  Fly   299 VVSSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMA---SSNLS----PGITTTP 356
             .:|.|:..| :....:|.......|....|   |.:|..|..|.:   ::..|    |.:|...
 Worm   315 -PASTPNRFP-SNNSANLPTTNFVPQTSQMY---AGLSQPAMDPYSFGIANGFSMAPYPQVTDFQ 374

  Fly   357 PHHHQFYNPSANTASYIMPGENGN---------TTPTGNI-------------IVSSYETQLGSV 399
            | ||.|...|.....|.....||:         ||..|:|             :::|.:..|
 Worm   375 P-HHMFQGRSPYDFPYPRMPTNGHGFQQSMSPATTAVGDIPTLSSGMSLPVSAVLNSIDPSL--- 435

  Fly   400 YGTETETHQ 408
              |.::.|:
 Worm   436 --THSQMHE 442

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
prd	NP_723721.1	PAX	27..154	CDD:238076	74/126 (59%)
		Homeodomain	214..270	CDD:459649	33/55 (60%)
vab-3	NP_001024570.1	PAX	5..129	CDD:128645	73/123 (59%)
		Homeodomain	219..274	CDD:459649	33/54 (61%)