DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and Zhx1

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_598304.2 Gene:Zhx1 / 171159 RGDID:620010 Length:873 Species:Rattus norvegicus


Alignment Length:687 Identity:121/687 - (17%)
Similarity:214/687 - (31%) Gaps:218/687 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LKIVEMAADGIRPCVISRQLRVSHGCV--SKILNRY----QETGSIRPGVIGGSKPRIATPEIEN 108
            |.:.....|...|.|:   |..|:.||  :.:..||    :......||            |...
  Rat    82 LNMFTFHVDSEHPNVV---LNSSYVCVECNFLTKRYDALSEHNLKYHPG------------EENF 131

  Fly   109 RIEEYKRSSPGMFSWEIRE-----KLIREGVCDR-------------STAPSVSAISRLVRGRDA 155
            ::...||::..:|...|.:     ..::|...::             |..|.:..:...|..:..
  Rat   132 KLTMVKRNNQTIFEQTINDLTFDGSFVKEENTEQGESIDVSSSGISISKTPIMKMMKNKVENKRI 196

  Fly   156 PLDNDMSSASGSPAGDGTKA----------SSSCGSDVSGGHHNNGKPSDED--ISDCESEPGIA 208
            .:.::.:..:.....:|.||          ||:..|:.|....|...||...  ::.....||:|
  Rat   197 TVHHNSAEGTSEEKENGVKASREENAENTSSSASESNTSTSTVNRVHPSPAGTVVTPTAVLPGLA 261

  Fly   209 LKRKQRRCRTTFSASQ---------------------LDE---LERAFERTQYPDIYTREELAQR 249
                  :..|..||.|                     ||.   |...:.:..||.:.....|:.:
  Rat   262 ------QVITAVSAQQNSNLVPKVLIPVNSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQ 320

  Fly   250 TNLTEARIQVWFSNRRAR-------------LRKQHTSVSGGAPGGAAASVSHVA-ASSSLPSVV 300
            ...||.:|::|||.:|.:             .|||........|.......:|:: .|:.|||::
  Rat   321 AKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSIL 385

  Fly   301 -------------------SSVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASS 346
                               :::|..||:|:....:...|..|:.          .|.||.|.|.:
  Rat   386 QTCQIVGQPGLVLTQVAGANTLPVTAPIALTVAGVPNQTNVQKS----------QVPAAQPAAET 440

  Fly   347 NLSPGITTTPPHHHQFYNPSAN-TASYIMPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTM 410
              .|.....|.      :||.. .|:.:.|...|       |.....:.||       .|...:.
  Rat   441 --KPATAAVPS------SPSVRPEAALVNPDSFG-------IRAKKTKEQL-------AELKVSY 483

  Fly   411 PRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAG-----SEELS 470
            .:|:.|::|             .:..::...|:|........:|...:..|:.:.     :.:.|
  Rat   484 LKNQFPHDS-------------EIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSS 535

  Fly   471 AALKVESVDLI----AASQSQLYGGWSS-------------------MQALRPNAPLSPEDSLN- 511
            |.:.::|.|..    ||:.||....|:.                   :||...|:.:..::.|| 
  Rat   536 ATIIIDSSDETPEPPAAAASQPKQSWNPFPDFAPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR 600

  Fly   512 ---STSSTSQALDVTAHQMFHPYQHTPQY-------------ASYPAPGHAHSHHGHPHAPHPHA 560
               .|..|.:.:|.    .|.....|...             :|...||.        ::|...|
  Rat   601 LRAQTKLTRREIDA----WFTEKNKTKALKDEKVEVDESNVGSSKEEPGE--------NSPGDEA 653

  Fly   561 HPHPQYAGAHPHYPPPSSSAHFMPQNFNAAAFPSPSK 597
             ..|:.||............|.:...|....:|||.:
  Rat   654 -VAPKSAGTGKICKKTPEQLHMLKSAFVRTQWPSPEE 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 21/127 (17%)
Homeodomain 214..270 CDD:459649 17/92 (18%)
Zhx1NP_598304.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..63
zf_C2H2_ZHX 98..150 CDD:465737 13/63 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..247 10/48 (21%)
Required for interaction with NFYA. /evidence=ECO:0000250 272..564 60/336 (18%)
Required for dimerization. /evidence=ECO:0000250 272..432 28/169 (17%)
homeodomain <299..343 CDD:238039 11/43 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 430..455 9/32 (28%)
homeodomain 468..523 CDD:238039 10/74 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 540..568 7/27 (26%)
HOX 576..616 CDD:197696 8/43 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 627..664 8/45 (18%)
HOX 665..716 CDD:197696 5/25 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 731..767
Required for nuclear localization. /evidence=ECO:0000250 734..768
Homez <785..821 CDD:463297
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 829..873
Required for repressor activity. /evidence=ECO:0000250 831..873
Blue background indicates that the domain is not in the aligned region.

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