DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and sebox

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_004911692.2 Gene:sebox / 100497846 XenbaseID:XB-GENE-853158 Length:275 Species:Xenopus tropicalis


Alignment Length:233 Identity:60/233 - (25%)
Similarity:90/233 - (38%) Gaps:51/233 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 NGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTE 254
            ||.||.:                ::|.||.:|..|..|||..|....||||.|||:||:...|.|
 Frog    43 NGSPSGQ----------------RKRKRTLYSKWQQLELESVFAIVPYPDISTREQLAKIIRLPE 91

  Fly   255 ARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPS---------VVSSVPSMAP-- 308
            :::||||.|||||..|...........|::..:||::..|..|.         :....|...|  
 Frog    92 SKVQVWFQNRRARKNKSGKLDRSLYRRGSSVRLSHLSLHSQSPPQNYSQRDPLITMQCPQNKPVQ 156

  Fly   309 --------LAMMPGSLDP------------ATVYQQQYDFYGSHANISVSAAAPMASSNLSPGIT 353
                    :|:.....||            ..:.:::...||.:|....:.|....||...|.:.
 Frog   157 HGSEGHKYIAIQQPLFDPYNELSLPPLEQYVGMEEKEQCTYGQNAFYWENMAENSNSSASEPTLY 221

  Fly   354 TTP-PHHHQFYNPSANTASYIMP---GENGNTTPTGNI 387
            ..| ....::.|.|..:...:.|   .|:|:.|..|.|
 Frog   222 NVPFVQLEKYMNCSQMSYLEMFPQAMNESGSQTTLGCI 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 29/55 (53%)
seboxXP_004911692.2 Homeodomain 51..104 CDD:459649 27/52 (52%)
Blue background indicates that the domain is not in the aligned region.

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