DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd and pax9

DIOPT Version :10

Sequence 1:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_002935394.1 Gene:pax9 / 100485934 XenbaseID:XB-GENE-482238 Length:360 Species:Xenopus tropicalis


Alignment Length:394 Identity:134/394 - (34%)
Similarity:169/394 - (42%) Gaps:104/394 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 88
            |....|.||||||||:|||||||.|||:|||:|..|||||.||||||||||||||||.||.||||
 Frog     1 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65

  Fly    89 IRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR-- 151
            |.||.|||||||:.||.:...|..||:..||:|:||||::|:.:||||:...||||:|||::|  
 Frog    66 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNK 130

  Fly   152 -------------------------------------GRDAPLDNDMSSASGSPAGDGTKASSSC 179
                                                 |...|....|.|..|:.....|..||..
 Frog   131 IGNLAQQNHYESHKQHPAAASALPYNHLYSYPSPIAAGAKVPTPPGMPSIPGTMGMPRTWPSSHS 195

  Fly   180 GSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQ--LDELERAFERTQYPDIYT 242
            .:|:.|     .:...:.:||....|...|:......|.||.::|  |:.||::           
 Frog   196 VTDILG-----IRSITDQVSDTSPYPSPKLEEWSSLSRNTFQSAQHVLNGLEKS----------- 244

  Fly   243 REELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMA 307
                                     ..:|....|..|.|..|.| ..||||...|     .|:.|
 Frog   245 -------------------------SLEQEVKYSQSASGLPAVS-GFVAASGMTP-----YPTTA 278

  Fly   308 PLA-MMPGSLDPATVY---------------QQQYDFYGSHANISVSAAAPMASSNLSPGITTTP 356
            |:: .|..|....|.|               ....|...|.|...:..|.....|.||.....:|
 Frog   279 PVSPYMAYSTAAPTGYVTGHGWQHTGGTPLSPHSCDITASLAFKGMHTAREAEESKLSIHTRKSP 343

  Fly   357 PHHH 360
            ..:|
 Frog   344 QSYH 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prdNP_723721.1 PAX 27..154 CDD:238076 86/165 (52%)
Homeodomain 214..270 CDD:459649 7/57 (12%)
pax9XP_002935394.1 PAX 6..131 CDD:238076 85/124 (69%)

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