DRSC/TRiP Functional Genomics Resources

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Protein Alignment firl and rdh10a

DIOPT Version :10

Sequence 1:NP_001033900.2 Gene:firl / 34627 FlyBaseID:FBgn0032405 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001074052.2 Gene:rdh10a / 562840 ZFINID:ZDB-GENE-070112-2242 Length:339 Species:Danio rerio


Alignment Length:299 Identity:88/299 - (29%)
Similarity:160/299 - (53%) Gaps:25/299 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LQFFELYVRILLELFVSLVQIVLPKKQKDVSGEIVLITGTGHGIGRELALHYASLGSTVVCVDID 88
            ::||.:.:::...:.::..:.::..|:|.|:|::.:|||.|.|:||..|..:|...:|:|..||:
Zfish     5 VEFFLVMLKVCWAIVMAGFKWLIRPKEKSVAGQVCVITGAGGGLGRLFAKEFARRRATLVLWDIN 69

  Fly    89 GKNNLQTVEKAKRL------------NLG----------EVYSYSCDVSKRDEVTALADRIKSDV 131
            ..:|.:|.|..:::            .:|          :||:|..||.||:.|.:.|::::.:|
Zfish    70 SHSNEETAEMVRQIYREQDNPMSKEGAVGGVEEVPPFQPQVYTYVLDVGKRESVYSTAEKVRKEV 134

  Fly   132 GCISVLVNNVGIMPTHPILQQSAEEIQRVFDVNVFSQFWTIQAFLPHMQEKCRGHIICMSSIAGL 196
            |.:.:|:||.|::..|.:|:...|.|:|...||..:.|||.:||||.|.|...|||:.::|..||
Zfish   135 GEVDLLINNAGVVSGHHLLECPDELIERTMVVNCHAHFWTTKAFLPKMLEMNHGHIVTVASSLGL 199

  Fly   197 VGISNLVPYCATKFAVRGLMEALHAELRQGPFRDLIRTTTIFPYMTNTGLCKHPKVK--FPSILG 259
            ...:.:..|||:||...|..|:|..|: |...:|.|:.|.:.||:.:||:.:..:::  ....|.
Zfish   200 FSTAGVEDYCASKFGAIGFHESLSHEI-QASEKDGIKMTLVCPYLVDTGMFRGCRIRKEIEPFLP 263

  Fly   260 LLDPKQVAKRIVEAHRTDLMEVTIPSCLLYINNWTRLLP 298
            .|.|:...|:.:.|..||...:..|..:..:|....:||
Zfish   264 PLRPEFCVKQAMRAILTDQPMICTPRIVYMVNFMKSILP 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
firlNP_001033900.2 17beta-HSDXI-like_SDR_c 57..299 CDD:187598 82/266 (31%)
rdh10aNP_001074052.2 17beta-HSDXI-like_SDR_c 38..305 CDD:187598 82/266 (31%)

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