DRSC/TRiP Functional Genomics Resources

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Protein Alignment Plzf and row-1

DIOPT Version :9

Sequence 1:NP_001285862.1 Gene:Plzf / 34622 FlyBaseID:FBgn0032401 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_001122473.1 Gene:row-1 / 172928 WormBaseID:WBGene00009508 Length:584 Species:Caenorhabditis elegans


Alignment Length:356 Identity:81/356 - (22%)
Similarity:136/356 - (38%) Gaps:63/356 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PAPGEAQPNPDPEKKAEAVFENRQSYFKLKNPRAVK-------SSSKVNYCIGCDFKCYQVQKMI 201
            |.|    |....|.|.:.:|.     ..|:|..|.:       |..::..|..|:.....|....
 Worm   203 PLP----PIEKKESKDDGMFS-----CLLRNSDAAQLAENSALSLKRLQTCQFCNAVFRTVHLKT 258

  Fly   202 EHMGSC--EPSHL--ICSLCEVGFLDWREYDTHLRRH-SGDLRKPFFCLQCGIRFNTRAALLVH- 260
            .|:..|  |..||  .|::||:.|.:....:||:::| ||:  .|:.|.:|..|.:.||....| 
 Worm   259 IHVVKCHMEQDHLDTTCNICELDFGNSIALNTHMKKHISGE--APYNCQKCKYRTSVRAFFYQHF 321

  Fly   261 QPKHSTET-PHICPHC--GKGFKWKQGLSNHILV---------HNPEKQMLCDVCGYSTTHMKAL 313
            ..|||.:: ..:||.|  .:..:.....|.||.|         |....||.|.||..:.|....|
 Worm   322 IEKHSNDSRTLLCPICLHHEDLRPNVRRSKHIFVREFVNHMRSHALGPQMRCHVCALTFTSRLLL 386

  Fly   314 KSHKLL-HT--GEFFACTVSGCKHRANRKENLKLH---------IETHKQGRDFICEVCGCKFSQ 366
            ::|:.. ||  ...:........|...|:...|.:         .|| .:||....|| .|    
 Worm   387 EAHRTNDHTMLNSLWQVIERKSVHETEREHMSKRNKIGLLQRRFFET-LEGRRINDEV-AC---- 445

  Fly   367 SKNLKRHALKHTENGPNRYKCQLCGFSSHRSDKMKEHVQRVH-----TEKPVQLELSETVDSSFP 426
            :.:.:|.....|..|...::|: |||.|...::...|..:..     .|:..::   ..:.|...
 Worm   446 AGDKEREGFDLTTTGDTLFECE-CGFKSWNGNRTASHYHKCRRSINDIERKREI---VRLGSDPK 506

  Fly   427 DDFELPVIETSPKKKPKSVKSKTIRNVNPDK 457
            ::.||..:...|.......:..|:|.::.::
 Worm   507 EELELFAVYPQPTNTEAETEEATLRKIHLER 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlzfNP_001285862.1 COG5048 <193..403 CDD:227381 61/239 (26%)
C2H2 Zn finger 214..234 CDD:275368 6/19 (32%)
C2H2 Zn finger 244..264 CDD:275368 6/20 (30%)
C2H2 Zn finger 272..292 CDD:275368 7/30 (23%)
C2H2 Zn finger 300..320 CDD:275368 6/20 (30%)
C2H2 Zn finger 330..349 CDD:275368 4/27 (15%)
C2H2 Zn finger 357..377 CDD:275368 4/19 (21%)
C2H2 Zn finger 387..408 CDD:275368 6/20 (30%)
row-1NP_001122473.1 GAT1 <15..288 CDD:227928 22/93 (24%)
C2H2 Zn finger 244..265 CDD:275368 4/20 (20%)
C2H2 Zn finger 275..295 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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