DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wdr81 and atg-16.2

DIOPT Version :9

Sequence 1:NP_609535.1 Gene:Wdr81 / 34616 FlyBaseID:FBgn0032395 Length:1953 Species:Drosophila melanogaster
Sequence 2:NP_495299.2 Gene:atg-16.2 / 174067 WormBaseID:WBGene00019427 Length:534 Species:Caenorhabditis elegans


Alignment Length:433 Identity:88/433 - (20%)
Similarity:160/433 - (36%) Gaps:105/433 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1478 NKAFGLPN------DFACDLANLSLVGGASQPERALEELRDV---------FGPELAHTAYLTFL 1527
            |:.|.|.|      :.:.:..|..:   |.|.|||...:|:.         .|.|.|.:|:.|..
 Worm   160 NERFQLLNRIRELQEKSAEFMNAEI---ALQEERAQMRIREQIAKATADLNLGDERASSAFGTSP 221

  Fly  1528 RFLGEANMKRTLSNLDFVLTLCHEHEQPNGQSKIQLATNVSSGQDVDSVDASCELAANSFGTQIV 1592
            ..|.|..|...|.:                :.|.:|:|:.....||:      .::.::|.|...
 Worm   222 ETLDEFMMTDVLPS----------------EVKFKLSTHDGEVHDVE------WMSDDTFATAGS 264

  Fly  1593 GNRLQVARNNVELIDMVAYKLDQMPKTRHLKG-----NWLAYWRNE----TTRNEKDTQTLNLKQ 1648
            .:::|:.|        |:.......|...|.|     |.|.|....    .:.|:|..:..|:..
 Worm   265 DSKVQIWR--------VSPNKTDASKVSTLSGCLGPVNRLDYDSQRHVCLASSNDKTCRLWNIDS 321

  Fly  1649 IRLQS-FVGHTNSVRAIYALDNENSFISASKDKTVKLWSLRSEGDGRKTSACQFTY--------T 1704
            .||.| |.|||:.|.:.....:.| .||.|.|:|:|.|.:.|       ..|..:|        .
 Worm   322 QRLLSTFSGHTDKVSSARLFQSHN-VISGSADRTIKNWDISS-------IRCLKSYLVGSTVFDI 378

  Fly  1705 AHKKSINSLGFLESLRYVVSCDSGIHLWDP---------FIGRPLSVLDAPRHSAVTVVKCLPSH 1760
            ..|..::...|:.|     ..|..:..||.         .:|:.:|.||            :...
 Worm   379 VAKCGVSQSSFISS-----HFDKKVRFWDARSSDATYSVELGQKVSSLD------------ISMD 426

  Fly  1761 SPLVIAGTAESTVKMVDARSCEYVNEWRVCNASLPNATVRCLAVAPSGNWLAAGLSSGCIVQLDT 1825
            ...|:|.:.:.|:.::|.|:...::.:..........:.|.: .:.:|.::.||.|:..:...:|
 Worm   427 GLQVLASSRDDTLSLIDVRNYGIIHLYSAEQYKTSCDSTRAI-FSSTGEYVLAGSSNSSVFIWNT 490

  Fly  1826 RT---GMVINSWRPMECDLLQLA-APSDQFLVSSALDHSLAVW 1864
            :|   ..|:.:.|.....::.|| .||.:.|::.....:..:|
 Worm   491 KTTKLEKVVKTARSDSAQIMSLAWNPSGRGLLACDRQKTCTLW 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr81NP_609535.1 Beach 345..588 CDD:100117
WD40 <1644..1877 CDD:225201 50/243 (21%)
WD40 1651..1876 CDD:295369 48/236 (20%)
WD40 repeat 1662..1705 CDD:293791 11/50 (22%)
WD40 repeat 1710..1744 CDD:293791 7/42 (17%)
WD40 repeat 1752..1788 CDD:293791 5/35 (14%)
WD40 repeat 1799..1836 CDD:293791 8/39 (21%)
atg-16.2NP_495299.2 ATG16 11..181 CDD:285778 4/20 (20%)
DUF904 107..175 CDD:299763 4/14 (29%)
WD40 <231..499 CDD:225201 61/323 (19%)
WD40 241..524 CDD:238121 66/322 (20%)
WD40 repeat 294..330 CDD:293791 10/35 (29%)
WD40 repeat 335..371 CDD:293791 12/43 (28%)
WD40 repeat 379..411 CDD:293791 6/36 (17%)
WD40 repeat 418..456 CDD:293791 8/49 (16%)
WD40 repeat 464..502 CDD:293791 8/38 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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