DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and Opn1sw

DIOPT Version :9

Sequence 1:NP_001285859.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_112277.2 Gene:Opn1sw / 81644 RGDID:621033 Length:346 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_001285859.1 7tm_4 60..>236 CDD:304433
7tm_1 69..332 CDD:278431
Opn1swNP_112277.2 7tmA_SWS1_opsin 33..312 CDD:320204
TM helix 1 35..59 CDD:320204
TM helix 2 68..90 CDD:320204
TM helix 3 106..128 CDD:320204
TM helix 4 150..166 CDD:320204
TM helix 5 196..219 CDD:320204
TM helix 6 246..268 CDD:320204
TM helix 7 280..305 CDD:320204
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 322..346
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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