DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and parietopsin

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:XP_073798480.1 Gene:parietopsin / 796632 ZFINID:ZDB-GENE-101129-2 Length:349 Species:Danio rerio


Alignment Length:337 Identity:75/337 - (22%)
Similarity:134/337 - (39%) Gaps:62/337 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 IYYHAGF----YIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCT------ 103
            |:...|:    |:.||...| |:|.|.|||.:...:........::|.:||:.||.:.|      
Zfish    17 IFPRVGYSILSYLMFINTTL-SVFNNVLVIAVMVKNLHFLNAMTVIIFSLAVSDLLIATCGSAIV 80

  Fly   104 NMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPIDG-RLSYGQIV 167
            .:.:|     .|....||..|..........|:.:..|...:|::||..:..|:.| :|:.|:..
Zfish    81 TVTNY-----EGSFFLGDAFCVFQGFAVNYFGLVSLCTLTLLAYERYNVVCKPMAGFKLNVGRSC 140

  Fly   168 LLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMIL 232
            ..:|..||:...::|.||.. |..|.|||..|:||..:...:..|..::....:..:::|..:|.
Zfish   141 QGLLLVWLYCLFWAVAPLLG-WSSYGPEGVQTSCSLGWEERSWRNYSYLILYTLMCFILPTVIIT 204

  Fly   233 VSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVV 297
            ..|..:...:|...|.:..|..|        |...||.    ...:..|.:.:.|.:.|.||:.:
Zfish   205 YCYSNVLLTMRKINKSIECQGGK--------NCAEDNE----HAVRMVLAMIIAFFVCWLPYTAI 257

  Fly   298 ALIGCFGEQQLITPFVSMLPCLACK----------------------------SVSCL----DPW 330
            :::.....:..|.|.::.:|....|                            |:.||    :|.
Zfish   258 SVLVVVNPEISIPPLIATMPMYFAKTSPVYNPIIYFLTNKRMVVFRELEFLTVSLVCLTSITNPI 322

  Fly   331 VYATSHPKYRLE 342
            :||..:|::|.|
Zfish   323 IYAAVNPQFRTE 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 74/332 (22%)
TM helix 1 54..80 CDD:320207 11/29 (38%)
TM helix 2 87..112 CDD:320207 7/30 (23%)
TM helix 3 124..154 CDD:320207 6/29 (21%)
TM helix 4 164..184 CDD:320207 5/19 (26%)
TM helix 5 212..241 CDD:320207 4/28 (14%)
TM helix 6 271..301 CDD:320207 5/29 (17%)
TM helix 7 311..336 CDD:320207 9/56 (16%)
parietopsinXP_073798480.1 None

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