DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and opn6a

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001073125.2 Gene:opn6a / 780836 ZFINID:ZDB-GENE-061201-30 Length:419 Species:Danio rerio


Alignment Length:330 Identity:76/330 - (23%)
Similarity:147/330 - (44%) Gaps:32/330 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 MVHAHWRG------FREAPIYYHAGFYIAFIVLMLS--SIFGNGLVIWIFSTSKSLRTPSNLLIL 92
            :|:..||.      .||.|:.......|...:|:|.  |.|||.:||::....:|...|::.|.|
Zfish     9 VVNIPWRNNNFSLMSREPPLSDQGETIIGVYLLILGWLSWFGNSIVIFVLFRQRSTLQPTDYLTL 73

  Fly    93 NLAIFDLFMCT------NMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYK 151
            |||:.|..:..      .:..:.|....|||:.....|.:......:.|:.:..|...|:..|:.
Zfish    74 NLAVSDASISVFGYSRGILEIFNIFKDSGYIISSVWTCQVDGFFTLVFGLSSINTLTVISITRFI 138

  Fly   152 TISNPIDGR-LSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYL--TNTDENR 213
            ...:|.... ::...:.:.::|.|:.|..:|..|:.. ||.|...|: .||..|::  ..:..::
Zfish   139 KGCHPHKAHCITNSTVAVCVVFIWIGAFFWSAAPVLG-WGSYTDRGY-GTCEIDWVKANYSTIHK 201

  Fly   214 LFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAK 278
            .::.:||::.:::|:.::|..|..:...|           |:.|..:...:.:.....:|..:..
Zfish   202 SYIISIFIFCFLVPVLLMLFCYISIINTV-----------KRGNAMNADGDLSDRQRKIERDVTI 255

  Fly   279 AALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLEL 343
            .:::|...|||||:||:||::...:|..  :....|:...|..||.|..:|.:|.....|:|.::
Zfish   256 VSIVICTAFILAWSPYAVVSMWSAWGFH--VPNLTSIFTRLFAKSASFYNPLIYFGLSSKFRKDV 318

  Fly   344 ERRLP 348
            ...||
Zfish   319 SVLLP 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 68/299 (23%)
TM helix 1 54..80 CDD:320207 9/27 (33%)
TM helix 2 87..112 CDD:320207 7/30 (23%)
TM helix 3 124..154 CDD:320207 5/29 (17%)
TM helix 4 164..184 CDD:320207 4/19 (21%)
TM helix 5 212..241 CDD:320207 5/28 (18%)
TM helix 6 271..301 CDD:320207 11/29 (38%)
TM helix 7 311..336 CDD:320207 7/24 (29%)
opn6aNP_001073125.2 None

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