Protein Alignment Rh5 and valopa

DIOPT Version :10

• Sequence 1: NP_477096.1
• Gene: Rh5 / 34615
• FlyBaseID: FBgn0014019
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_571661.1
• Gene: valopa / 58109
• ZFINID: ZDB-GENE-000427-4
• Length: 377
• Species: Danio rerio
• Alignment Length: 352
• Identity: 84/352 - (23%)
• Similarity: 149/352 - (42%)
• Gaps: 53/352 - (15%)

  Fly    47 APIYYHAGFYIAFIV--LMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCTNMPHYL 109
            ||..|.....:.|:|  |.||..|...||.:.|   :.||.|.|.:|:||::.|         :|
Zfish    26 APWNYSVLAALMFVVTALSLSENFTVMLVTFRF---QQLRQPLNYIIVNLSLAD---------FL 78

  Fly   110 INAT----------VGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPIDG-RLSY 163
            ::.|          .||...|...|.:........|:.|..:.|.:||:|:..|..|:.. ||..
Zfish    79 VSLTGGSISFLTNYHGYFFLGKWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRPLGNIRLRG 143

  Fly   164 GQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPM 228
            ....|.::|.|.::..::|.|:.. |..|......|||..::.:....:..|:.|:|...::.|:
Zfish   144 KHAALGLVFVWSFSFIWTVPPVLG-WSSYTVSRIGTTCEPNWYSGNFHDHTFIITLFSTCFIFPL 207

  Fly   229 TMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTP 293
            .:|:|.|.||...:|          |..|......||.    ..|.::.:..:::.:.|::||||
Zfish   208 GVIIVCYCKLIRKLR----------KVSNTHGRLGNAR----KPERQVTRMVVVMIVAFMVAWTP 258

  Fly   294 YSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWLGI------ 352
            |:..::|........:.|.::.:|....|:.:..:|.:|...:.::|..|.:.|....:
Zfish   259 YAAFSIIITAHPSMHVDPRLAAIPAFVAKTAAVYNPIIYVFMNKQFRKCLVQLLSCSKVTVVEGN 323

  Fly   353 -----REKHATSGTSGGQES--VASVS 372
                 .....|||::.|:.|  .|.||
Zfish   324 NNQTTERAGMTSGSNTGEMSAIAARVS 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh5	NP_477096.1	7tmA_photoreceptors_insect	54..343	CDD:320207	71/301 (24%)
		TM helix 1	54..80	CDD:320207	9/27 (33%)
		TM helix 2	87..112	CDD:320207	6/24 (25%)
		TM helix 3	124..154	CDD:320207	7/29 (24%)
		TM helix 4	164..184	CDD:320207	4/19 (21%)
		TM helix 5	212..241	CDD:320207	9/28 (32%)
		TM helix 6	271..301	CDD:320207	7/29 (24%)
		TM helix 7	311..336	CDD:320207	5/24 (21%)
valopa	NP_571661.1	7tmA_VA_opsin	18..308	CDD:320210	74/308 (24%)
		TM helix 1	32..58	CDD:320210	8/25 (32%)
		TM helix 2	65..92	CDD:320210	7/35 (20%)
		TM helix 3	103..133	CDD:320210	7/29 (24%)
		TM helix 4	146..164	CDD:320210	4/17 (24%)
		TM helix 5	191..221	CDD:320210	9/29 (31%)
		TM helix 6	236..266	CDD:320210	7/29 (24%)
		TM helix 7	276..301	CDD:320210	5/24 (21%)