DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and Opn3

DIOPT Version :9

Sequence 1:NP_001285859.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001178862.1 Gene:Opn3 / 498289 RGDID:1594385 Length:400 Species:Rattus norvegicus


Alignment Length:357 Identity:87/357 - (24%)
Similarity:150/357 - (42%) Gaps:53/357 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHINGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIYYHAGF-YIAFIV--L 62
            |:....||.|.|..|..|.....|.|...|                ||::....: .:|.::  |
  Rat     1 MYSGNRSGGQGYWEDGAGAEGAAPAGTRSP----------------APLFSPTAYERLALLLGCL 49

  Fly    63 MLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCTNMPHYLINATVGYI-------VGG 120
            .|..:.||.||:.::|....||||::|.::||::.||.:.      |...|..:.       |..
  Rat    50 ALLGVGGNLLVLLLYSKFPRLRTPTHLFLVNLSLGDLLVS------LFGVTFTFASCLRNGWVWD 108

  Fly   121 DLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPIDGR-LSYGQIVLLILFTWLWATPFSVLP 184
            .:||.....:|.:.|..:..|...:|::||..:   :..| :::......|.:.||::..::..|
  Rat   109 AVGCAWDGFSGSLFGFVSITTLTVLAYERYIRV---VHARVINFSWAWRAITYIWLYSLAWAGAP 170

  Fly   185 LFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRV---HE 246
            |.. |.||..:.....|:.|:.:....:..||..:|:...|:||.:|...|..:...||:   .|
  Rat   171 LLG-WNRYILDVHGLGCTVDWKSKDANDSSFVLFLFLGCLVVPMGIIAHCYGHILYSVRMLRCVE 234

  Fly   247 KMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITP 311
            .:...|..||             :..|.::||...::..:|:..|.||.|...:...|...|:||
  Rat   235 DLQTIQVIKM-------------LRYEKKVAKMCFLMAFVFLTCWMPYVVTRFLVVNGYGHLVTP 286

  Fly   312 FVSMLPCLACKSVSCLDPWVYATSHPKYRLEL 343
            .||::..|..||.:..:|.:|.....|:|..|
  Rat   287 TVSIVSYLFAKSSTVYNPVIYIFMIRKFRRSL 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_001285859.1 7tm_4 60..>236 CDD:304433 45/185 (24%)
7tm_1 69..332 CDD:278431 68/273 (25%)
Opn3NP_001178862.1 7tm_GPCRs 64..317 CDD:421689 67/275 (24%)
TM helix 2 74..101 CDD:410628 7/32 (22%)
TM helix 3 112..142 CDD:410628 7/32 (22%)
TM helix 4 150..172 CDD:410628 4/21 (19%)
TM helix 5 197..227 CDD:410628 8/29 (28%)
TM helix 6 246..276 CDD:410628 8/29 (28%)
TM helix 7 286..311 CDD:410628 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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