Protein Alignment Rh5 and rrh

DIOPT Version :10

• Sequence 1: NP_477096.1
• Gene: Rh5 / 34615
• FlyBaseID: FBgn0014019
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001004654.3
• Gene: rrh / 447916
• ZFINID: ZDB-GENE-040912-94
• Length: 341
• Species: Danio rerio
• Alignment Length: 300
• Identity: 83/300 - (27%)
• Similarity: 144/300 - (48%)
• Gaps: 38/300 - (12%)

  Fly    53 AGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCTNMPHYLINATVGYI 117
            |.:.|...|:.|||   |.:|:.:|...:.|||.:|.:|:|||..|:.:          |.:||.
Zfish    36 AAYLITAGVISLSS---NIVVLLMFVKFRELRTATNAIIINLAFTDIGV----------AGIGYP 87

  Fly   118 VG-----------GDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNP-IDGRLSYGQIVLLI 170
            :.           |.:||.|||......||.:......:|.|||.||..| |..:|:.....|||
Zfish    88 MSAASDLHGSWKFGYMGCQIYAALNIFFGMASIGLLTVVAIDRYLTICRPDIGQKLTTRSYTLLI 152

  Fly   171 LFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSY 235
            :..||.|..:|.:|:.. |..|.|:....||:.::..|......:..|:...:::||::::...|
Zfish   153 VAAWLNAVFWSSMPIVG-WAGYAPDPTGATCTINWRNNDTSFVSYTMTVITVNFIIPLSVMFYCY 216

  Fly   236 YKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALI 300
            |.:...|           |:....:...:.|.| .|.::.:.|.::|:.::|:.||:|||:|.|.
Zfish   217 YNVSATV-----------KRFKASNCLDSINMD-WSDQMDVTKMSVIMIVMFLAAWSPYSIVCLW 269

  Fly   301 GCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYR 340
            ..||:.|.|...::::..|..||.:..:|.:|..::.|:|
Zfish   270 ASFGDPQKIPAPMAIIAPLFAKSSTFYNPCIYVIANKKFR 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh5	NP_477096.1	7tmA_photoreceptors_insect	54..343	CDD:320207	81/298 (27%)
		TM helix 1	54..80	CDD:320207	8/25 (32%)
		TM helix 2	87..112	CDD:320207	6/24 (25%)
		TM helix 3	124..154	CDD:320207	11/29 (38%)
		TM helix 4	164..184	CDD:320207	7/19 (37%)
		TM helix 5	212..241	CDD:320207	5/28 (18%)
		TM helix 6	271..301	CDD:320207	11/29 (38%)
		TM helix 7	311..336	CDD:320207	5/24 (21%)
rrh	NP_001004654.3	None