DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and opn1mw3

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_878312.1 Gene:opn1mw3 / 360152 ZFINID:ZDB-GENE-030728-6 Length:349 Species:Danio rerio


Alignment Length:351 Identity:94/351 - (26%)
Similarity:146/351 - (41%) Gaps:50/351 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 INGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIYYHA---GFYIAFIVLML 64
            :||..|...|:..|...|.|     ..|.||              |.||.|   .|.:..:.:..
Zfish     1 MNGTEGNNFYIPMSNRTGLV-----RSPYEY--------------PQYYLAEPWQFKLLAVYMFF 46

  Fly    65 SSIFG---NGLVIWIFSTSKSLRTPSNLLILNLAIFDLFM-CTNMPHYLINATVGYIVGGDLGCD 125
            ...||   |||.:.:.:..|.||.|.|.:::|||:....| |.........|..||.|.|..|| 
Zfish    47 LMCFGFPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFGFTVTFYTAINGYFVLGPTGC- 110

  Fly   126 IYALNGGISGMGASI---TNAFIAFDRYKTISNPIDG-RLSYGQIVLLILFTWLWATPFSVLPLF 186
              |:.|.::.:|..|   :...:|.:||..:..|:.. :.|.......|.|||:.|...:..||.
Zfish   111 --AIEGFMATLGGQISLWSLVVLAIERYIVVCKPMGSFKFSSNHAFAGIGFTWIMALSCAAPPLV 173

  Fly   187 QIWGRYQPEGFLTTCSFDYLT-NTD-ENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKML 249
            . |.||.|||...:|..||.| |.| .|..:|..:|...::.|:|.|..:|.:|...|:      
Zfish   174 G-WSRYIPEGMQCSCGPDYYTLNPDYNNESYVLYMFCCHFIFPVTTIFFTYGRLVCTVK------ 231

  Fly   250 AEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVS 314
            |..|::...:|        ....|..:.:..:::.:.|::|||||:.||....|......:....
Zfish   232 AAAAQQQESES--------TQKAEREVTRMVILMVLGFLVAWTPYASVAAWIFFNRGAAFSAQFM 288

  Fly   315 MLPCLACKSVSCLDPWVYATSHPKYR 340
            .:|....||.|..:|.:|...:.::|
Zfish   289 AVPAFFSKSSSIFNPIIYVLLNKQFR 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 80/297 (27%)
TM helix 1 54..80 CDD:320207 6/28 (21%)
TM helix 2 87..112 CDD:320207 6/25 (24%)
TM helix 3 124..154 CDD:320207 8/32 (25%)
TM helix 4 164..184 CDD:320207 5/19 (26%)
TM helix 5 212..241 CDD:320207 8/28 (29%)
TM helix 6 271..301 CDD:320207 9/29 (31%)
TM helix 7 311..336 CDD:320207 6/24 (25%)
opn1mw3NP_878312.1 Rhodopsin_N 3..37 CDD:313611 13/52 (25%)
7tm_GPCRs 39..317 CDD:475119 79/294 (27%)
TM helix 1 40..64 CDD:410628 5/23 (22%)
TM helix 2 73..95 CDD:410628 6/21 (29%)
TM helix 3 111..133 CDD:410628 4/21 (19%)
TM helix 4 155..171 CDD:410628 5/15 (33%)
TM helix 5 201..224 CDD:410628 5/22 (23%)
TM helix 6 251..273 CDD:410628 7/21 (33%)
TM helix 7 285..310 CDD:410628 6/24 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..349
Blue background indicates that the domain is not in the aligned region.

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