Protein Alignment Rh5 and tmtopsa

DIOPT Version :10

• Sequence 1: NP_477096.1
• Gene: Rh5 / 34615
• FlyBaseID: FBgn0014019
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001112371.1
• Gene: tmtopsa / 359832
• ZFINID: ZDB-GENE-030716-3
• Length: 387
• Species: Danio rerio
• Alignment Length: 299
• Identity: 83/299 - (27%)
• Similarity: 150/299 - (50%)
• Gaps: 26/299 - (8%)

  Fly    43 GFREAPIYYH----AGFYIAFIVLMLSSIFG---NGLVIWIFSTSKSLRTPSNLLILNLAIFDLF 100
            |..||...|.    .|..:..:.|.....||   |.||:.:|...|.||:|.|.|::|:.:.||.
Zfish    24 GHLEASSSYRTLSPTGHILVAVSLGFIGTFGFLNNLLVLVLFGRYKVLRSPINFLLVNICLSDLL 88

  Fly   101 MCT-NMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPIDG-RLSY 163
            :|. ..|.....:|.|..:.||.||..|.....:.|:.:.|:.|.::::||.|:....:. ..:|
Zfish    89 VCVLGTPFSFAASTQGRWLIGDTGCVWYGFANSLLGIVSLISLAVLSYERYCTMMGSTEADATNY 153

  Fly   164 GQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPM 228
            .:::..:|.:|:::..:::.|||. |.||.|||..||||.|:.|.|..|..::..:|::..::|.
Zfish   154 KKVIGGVLMSWIYSLIWTLPPLFG-WSRYGPEGPGTTCSVDWTTKTANNISYIICLFIFCLIVPF 217

  Fly   229 TMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTP 293
            .:|:..|.||     :|.           :|.:|:...:.:...|.|:....:.:.:.::|.|.|
Zfish   218 LVIIFCYGKL-----LHA-----------IKQVSSVNTSVSRKREHRVLLMVITMVVFYLLCWLP 266

  Fly   294 YSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVY 332
            |.::||:..||...|:|...|::|.:..||.:.::|.:|
Zfish   267 YGIMALLATFGAPGLVTAEASIVPSILAKSSTVINPVIY 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh5	NP_477096.1	7tmA_photoreceptors_insect	54..343	CDD:320207	79/284 (28%)
		TM helix 1	54..80	CDD:320207	8/28 (29%)
		TM helix 2	87..112	CDD:320207	7/25 (28%)
		TM helix 3	124..154	CDD:320207	8/29 (28%)
		TM helix 4	164..184	CDD:320207	2/19 (11%)
		TM helix 5	212..241	CDD:320207	7/28 (25%)
		TM helix 6	271..301	CDD:320207	8/29 (28%)
		TM helix 7	311..336	CDD:320207	6/22 (27%)
tmtopsa	NP_001112371.1	7tmA_tmt_opsin	41..316	CDD:320214	78/282 (28%)
		TM helix 1	42..68	CDD:320214	7/25 (28%)
		TM helix 2	75..101	CDD:320214	7/25 (28%)
		TM helix 3	113..143	CDD:320214	8/29 (28%)
		TM helix 4	154..176	CDD:320214	3/21 (14%)
		TM helix 5	201..231	CDD:320214	8/45 (18%)
		TM helix 6	244..274	CDD:320214	8/29 (28%)
		TM helix 7	284..309	CDD:320214	6/22 (27%)