DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and opn1sw1

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_571394.2 Gene:opn1sw1 / 30582 ZFINID:ZDB-GENE-991109-25 Length:336 Species:Danio rerio


Alignment Length:319 Identity:77/319 - (24%)
Similarity:148/319 - (46%) Gaps:46/319 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 QHMVHAHWRGFREAPIYYHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLA--- 95
            |:.:...|       .:|....::.|:.::.:.:  ||:|:::....|.||.|.|.:::|::   
Zfish    21 QYHIAPKW-------AFYLQAAFMGFVFIVGTPM--NGIVLFVTMKYKKLRQPLNYILVNISLAG 76

  Fly    96 -IFD------LFMCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTI 153
             |||      :|:|....:|.:..|:         |.:.|..|.|:|:....:.|.:||:||..|
Zfish    77 FIFDTFSVSQVFVCAARGYYFLGYTL---------CAMEAAMGSIAGLVTGWSLAVLAFERYVVI 132

  Fly   154 SNPIDG-RLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDE--NRLF 215
            ..|... :...||.|..::|||:..|..:..|.|. |.||.|||..|.|..|:.|.::|  :..:
Zfish   133 CKPFGSFKFGQGQAVGAVVFTWIIGTACATPPFFG-WSRYIPEGLGTACGPDWYTKSEEYNSESY 196

  Fly   216 VRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAA 280
            ...:.|..:::|||:|:.||.:|...:|.   :.|:||:           :......|..:::..
Zfish   197 TYFLLVTCFMMPMTIIIFSYSQLLGALRA---VAAQQAE-----------SESTQKAEREVSRMV 247

  Fly   281 LIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKY 339
            :::...|:|.:.||:|.|:.....::......:..:|....||....:|.:||..:.::
Zfish   248 VVMVGSFVLCYAPYAVTAMYFANSDEPNKDYRLVAIPAFFSKSSCVYNPLIYAFMNKQF 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 74/299 (25%)
TM helix 1 54..80 CDD:320207 4/25 (16%)
TM helix 2 87..112 CDD:320207 8/34 (24%)
TM helix 3 124..154 CDD:320207 10/29 (34%)
TM helix 4 164..184 CDD:320207 7/19 (37%)
TM helix 5 212..241 CDD:320207 8/28 (29%)
TM helix 6 271..301 CDD:320207 7/29 (24%)
TM helix 7 311..336 CDD:320207 6/24 (25%)
opn1sw1NP_571394.2 7tm_GPCRs 31..310 CDD:475119 75/302 (25%)
TM helix 1 33..57 CDD:410628 4/25 (16%)
TM helix 2 66..88 CDD:410628 5/21 (24%)
TM helix 3 104..126 CDD:410628 5/21 (24%)
TM helix 4 148..164 CDD:410628 4/15 (27%)
TM helix 5 194..217 CDD:410628 6/22 (27%)
TM helix 6 244..266 CDD:410628 5/21 (24%)
TM helix 7 278..303 CDD:410628 6/24 (25%)

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