DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and Rho

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_663358.1 Gene:Rho / 212541 MGIID:97914 Length:348 Species:Mus musculus


Alignment Length:350 Identity:97/350 - (27%)
Similarity:148/350 - (42%) Gaps:48/350 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 INGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIYYHA-----GFYIAFIVL 62
            :||..||..||..|...|.|                   |...|.|.||.|     ....|::.|
Mouse     1 MNGTEGPNFYVPFSNVTGVV-------------------RSPFEQPQYYLAEPWQFSMLAAYMFL 46

  Fly    63 MLSSIFG---NGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMC-TNMPHYLINATVGYIVGGDLG 123
            ::  :.|   |.|.:::....|.||||.|.::||||:.||||. ......|..:..||.|.|..|
Mouse    47 LI--VLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG 109

  Fly   124 CDIYALNGGISGMGASITNAFIAFDRYKTISNPIDG-RLSYGQIVLLILFTWLWATPFSVLPLFQ 187
            |::......:.|..|..:...:|.:||..:..|:.. |......::.::|||:.|...:..||..
Mouse   110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVVFTWIMALACAAPPLVG 174

  Fly   188 IWGRYQPEGFLTTCSFDYLTNTDE--NRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLA 250
             |.||.|||...:|..||.|...|  |..||..:||..:.|||.:|...|.:|...|:   :..|
Mouse   175 -WSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVK---EAAA 235

  Fly   251 EQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSM 315
            :|.:           :|.....|..:.:..:|:.:.|::.|.||:.||......:.....|....
Mouse   236 QQQE-----------SATTQKAEKEVTRMVIIMVIFFLICWLPYASVAFYIFTHQGSNFGPIFMT 289

  Fly   316 LPCLACKSVSCLDPWVYATSHPKYR 340
            ||....||.|..:|.:|...:.::|
Mouse   290 LPAFFAKSSSIYNPVIYIMLNKQFR 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 81/293 (28%)
TM helix 1 54..80 CDD:320207 5/28 (18%)
TM helix 2 87..112 CDD:320207 10/25 (40%)
TM helix 3 124..154 CDD:320207 6/29 (21%)
TM helix 4 164..184 CDD:320207 4/19 (21%)
TM helix 5 212..241 CDD:320207 11/28 (39%)
TM helix 6 271..301 CDD:320207 8/29 (28%)
TM helix 7 311..336 CDD:320207 8/24 (33%)
RhoNP_663358.1 Rhodopsin_N 3..37 CDD:313611 14/52 (27%)
7tmA_MWS_opsin 38..317 CDD:381742 81/293 (28%)
TM helix 1 39..65 CDD:381742 5/27 (19%)
TM helix 2 72..99 CDD:381742 10/26 (38%)
TM helix 3 110..140 CDD:381742 6/29 (21%)
'Ionic lock' involved in activated form stabilization. /evidence=ECO:0000250|UniProtKB:P02699 134..136 0/1 (0%)
TM helix 4 151..173 CDD:381742 5/21 (24%)
TM helix 5 200..230 CDD:381742 11/29 (38%)
TM helix 6 245..275 CDD:381742 8/29 (28%)
TM helix 7 285..310 CDD:381742 8/24 (33%)
Interaction with SAG. /evidence=ECO:0000250|UniProtKB:P02699 330..348
Blue background indicates that the domain is not in the aligned region.

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