DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and LOC11175546

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:XP_003435759.2 Gene:LOC11175546 / 11175546 -ID:- Length:370 Species:Anopheles gambiae


Alignment Length:350 Identity:136/350 - (38%)
Similarity:193/350 - (55%) Gaps:12/350 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PAEYQHMVHAHWRGFREAPIYYHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNL 94
            |.|..||||.||..|......:|:....|..:|.:.|:.|||.|::||:.:||||||||||::||
Mosquito    26 PPEMLHMVHPHWNQFPLMNPLWHSILGFAIFMLGMISMTGNGCVMYIFTNTKSLRTPSNLLVVNL 90

  Fly    95 AIFDLFMCTNM-PHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPID 158
            |..|.||...| |..:||........|...|::||:.|.:.|..:..|...||||||..|...:.
Mosquito    91 AFSDFFMMFTMGPPMVINCWHETWTFGPFACELYAMLGSLFGCASIWTMTMIAFDRYNVIVKGLA 155

  Fly   159 GR-LSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVW 222
            |: ::....:|.||..|::|..:::.|||. |.||.|||.:|.|..||||.|..:|.::....::
Mosquito   156 GKPMTNNGALLRILGVWVFALFWTLAPLFG-WNRYVPEGNMTACGTDYLTQTWLSRSYIIIYAIF 219

  Fly   223 SYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLF 287
            .|.:|:..|:.||..:...|..|||.:.||||||||.||... .|.|.|.|:::||.||:...|:
Mosquito   220 VYWLPLLTIIYSYTFILKAVSAHEKNMREQAKKMNVASLRTQ-EAQNTSTEMKLAKVALVTISLW 283

  Fly   288 ILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWLGI 352
            .:|||||.|:...|.| :...|:|..::...|..|:.:..:|.||..||||||..|.::.|.|..
Mosquito   284 FMAWTPYLVINFTGIF-KAAPISPLATIWGSLFAKANAVYNPIVYGISHPKYRAALYQKFPSLSC 347

  Fly   353 REKHATSGTSGGQESVASVSGDTLA 377
            ::.....|     :|||  ||.|.|
Mosquito   348 QDAPVDDG-----QSVA--SGATQA 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 115/290 (40%)
TM helix 1 54..80 CDD:320207 9/25 (36%)
TM helix 2 87..112 CDD:320207 13/25 (52%)
TM helix 3 124..154 CDD:320207 12/29 (41%)
TM helix 4 164..184 CDD:320207 5/19 (26%)
TM helix 5 212..241 CDD:320207 6/28 (21%)
TM helix 6 271..301 CDD:320207 13/29 (45%)
TM helix 7 311..336 CDD:320207 6/24 (25%)
LOC11175546XP_003435759.2 None

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