Protein Alignment Rh5 and tmtops3b

DIOPT Version :10

• Sequence 1: NP_477096.1
• Gene: Rh5 / 34615
• FlyBaseID: FBgn0014019
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001269304.1
• Gene: tmtops3b / 102031126
• ZFINID: ZDB-GENE-091204-311
• Length: 379
• Species: Danio rerio
• Alignment Length: 333
• Identity: 86/333 - (25%)
• Similarity: 156/333 - (46%)
• Gaps: 53/333 - (15%)

  Fly    12 YVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIYYHAGFYIAFIVLMLSSIFG---NGLV 73
            ::.||..:||:.          ..:..|...||.      .||:.:..::|.:..:||   |.:|
Zfish     6 FLRDSSVNGSLL----------DSLSPADQTGFS------RAGYTVVAVILGIIFVFGFLCNFVV 54

  Fly    74 IWIFSTSKSLRTPSNLLILNLAIFDLFMCT-NMPHYLINATVGYIVGGDLGCDIYALNGGISGMG 137
            :.:|:....||||.||::||:.:.|:.:|. ..|.....:..|..:.|..||..|.....:.|:.
Zfish    55 LLVFARFHVLRTPINLILLNIIVSDMLVCLFGTPLSFAASVHGRWLTGVHGCRWYGFANALFGIV 119

  Fly   138 ASITNAFIAFDRYKTI--SNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTT 200
            :.::.|.::::||.||  |:..|.. .|.:..|.|...||::..::|.||.. |..|.|||..||
Zfish   120 SLVSLAVLSYERYSTILCSSKADAS-DYRKAWLFITGCWLYSLLWTVPPLLG-WSSYGPEGPGTT 182

  Fly   201 CSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHE----KMLAEQAKKMNVKSL 261
            ||..:...:.|.|.:|..:||:..::|:.:::..|.|:.  :.:|.    ...|.|.::.:|
Zfish   183 CSVQWNKRSPETRSYVICLFVFCLLLPLLLMVYCYGKIL--IAIHGVAKINQTAAQRRETHV--- 242

  Fly   262 SANANADNMSVELRIAKAALIIYML--FILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSV 324
                             ..:::.|:  ::|.|.||.|:||:|.| ...:.:|..|::..|..||.
Zfish   243 -----------------LVMVVSMVSCYLLCWMPYGVMALLGTF-SAGITSPTASVVSSLLAKSS 289

  Fly   325 SCLDPWVY 332
            :.|:|.:|
Zfish   290 TVLNPIIY 297

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh5	NP_477096.1	7tmA_photoreceptors_insect	54..343	CDD:320207	78/291 (27%)
		TM helix 1	54..80	CDD:320207	7/28 (25%)
		TM helix 2	87..112	CDD:320207	7/25 (28%)
		TM helix 3	124..154	CDD:320207	8/31 (26%)
		TM helix 4	164..184	CDD:320207	5/19 (26%)
		TM helix 5	212..241	CDD:320207	7/28 (25%)
		TM helix 6	271..301	CDD:320207	8/31 (26%)
		TM helix 7	311..336	CDD:320207	8/22 (36%)
tmtops3b	NP_001269304.1	7tm_GPCRs	34..308	CDD:475119	77/289 (27%)
		TM helix 1	36..60	CDD:410628	6/23 (26%)
		TM helix 2	69..91	CDD:410628	7/21 (33%)
		TM helix 3	107..129	CDD:410628	3/21 (14%)
		TM helix 4	151..167	CDD:410628	5/15 (33%)
		TM helix 5	195..218	CDD:410628	5/22 (23%)
		TM helix 6	243..265	CDD:410628	6/21 (29%)
		TM helix 7	276..301	CDD:410628	8/22 (36%)