DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and opn4b

DIOPT Version :9

Sequence 1:NP_001285859.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001245153.1 Gene:opn4b / 100884131 ZFINID:ZDB-GENE-080415-3 Length:565 Species:Danio rerio


Alignment Length:340 Identity:108/340 - (31%)
Similarity:193/340 - (56%) Gaps:23/340 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 HAGFYIAFIVLM--LSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMC-TNMPHYLINAT 113
            ||.:.|..::|.  ::.:.||.||::.|..|:|||||:|:.|:|||:.|..|| |..|.:...:.
Zfish    66 HAHYTIGSVILAVGITGMVGNLLVMYAFCKSRSLRTPANMFIINLAVTDFLMCVTQTPIFFTTSL 130

  Fly   114 VGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPID--GRLSYGQIVLLILFTWLW 176
            ....:.|:.||::||..|.:.|:.:.||...||.|||..|:.|:.  |.:|..:.:|::...|.:
Zfish   131 HKRWIFGEKGCELYAFCGALFGICSMITLMIIAVDRYFVITRPLASIGVMSRKRALLILSAAWAY 195

  Fly   177 ATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTH 241
            :..:|:.|.|. |..|.|||.||:||:||:|.:...|.:...:|.:.:.||:.:|:..|:.:|..
Zfish   196 SMGWSLPPFFG-WSAYVPEGLLTSCSWDYMTFSPSVRAYTMLLFTFVFFIPLFVIIYCYFFIFKA 259

  Fly   242 VRVHE----KMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGC 302
            :|...    |:..|...:.::|.:      ..|..|.::||.|||:.:|::::|:|||.|||...
Zfish   260 IRETNRAVGKINGEGGPRDSIKKI------HRMKNEWKMAKIALIVILLYVISWSPYSCVALTAF 318

  Fly   303 FGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWLGI------REKHATSG- 360
            .|...::||:::.:|.:..|:.:..:|.:||.:|||||..:.:.:|.||:      |::.::|. 
Zfish   319 AGYADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRSAIAKYIPCLGVLLCVPRRDRFSSSSF 383

  Fly   361 TSGGQESVASVSGDT 375
            .|..:.::.|.|.:|
Zfish   384 ISTRRSTLTSQSSET 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_001285859.1 7tm_4 60..>236 CDD:304433 62/180 (34%)
7tm_1 69..332 CDD:278431 88/269 (33%)
opn4bNP_001245153.1 7tm_4 78..>305 CDD:304433 75/233 (32%)
7tm_1 85..348 CDD:278431 88/269 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590452
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24240
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.940

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