DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and opn4b

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001245153.1 Gene:opn4b / 100884131 ZFINID:ZDB-GENE-080415-3 Length:565 Species:Danio rerio


Alignment Length:340 Identity:108/340 - (31%)
Similarity:193/340 - (56%) Gaps:23/340 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 HAGFYIAFIVLM--LSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMC-TNMPHYLINAT 113
            ||.:.|..::|.  ::.:.||.||::.|..|:|||||:|:.|:|||:.|..|| |..|.:...:.
Zfish    66 HAHYTIGSVILAVGITGMVGNLLVMYAFCKSRSLRTPANMFIINLAVTDFLMCVTQTPIFFTTSL 130

  Fly   114 VGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTISNPID--GRLSYGQIVLLILFTWLW 176
            ....:.|:.||::||..|.:.|:.:.||...||.|||..|:.|:.  |.:|..:.:|::...|.:
Zfish   131 HKRWIFGEKGCELYAFCGALFGICSMITLMIIAVDRYFVITRPLASIGVMSRKRALLILSAAWAY 195

  Fly   177 ATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTH 241
            :..:|:.|.|. |..|.|||.||:||:||:|.:...|.:...:|.:.:.||:.:|:..|:.:|..
Zfish   196 SMGWSLPPFFG-WSAYVPEGLLTSCSWDYMTFSPSVRAYTMLLFTFVFFIPLFVIIYCYFFIFKA 259

  Fly   242 VRVHE----KMLAEQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGC 302
            :|...    |:..|...:.::|.:      ..|..|.::||.|||:.:|::::|:|||.|||...
Zfish   260 IRETNRAVGKINGEGGPRDSIKKI------HRMKNEWKMAKIALIVILLYVISWSPYSCVALTAF 318

  Fly   303 FGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWLGI------REKHATSG- 360
            .|...::||:::.:|.:..|:.:..:|.:||.:|||||..:.:.:|.||:      |::.::|. 
Zfish   319 AGYADMLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRSAIAKYIPCLGVLLCVPRRDRFSSSSF 383

  Fly   361 TSGGQESVASVSGDT 375
            .|..:.::.|.|.:|
Zfish   384 ISTRRSTLTSQSSET 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 97/297 (33%)
TM helix 1 54..80 CDD:320207 7/27 (26%)
TM helix 2 87..112 CDD:320207 10/25 (40%)
TM helix 3 124..154 CDD:320207 12/29 (41%)
TM helix 4 164..184 CDD:320207 3/19 (16%)
TM helix 5 212..241 CDD:320207 7/28 (25%)
TM helix 6 271..301 CDD:320207 14/29 (48%)
TM helix 7 311..336 CDD:320207 6/24 (25%)
opn4bNP_001245153.1 7tmA_Melanopsin 69..359 CDD:320458 97/296 (33%)
TM helix 1 70..96 CDD:320458 7/25 (28%)
TM helix 2 103..129 CDD:320458 10/25 (40%)
TM helix 3 141..171 CDD:320458 12/29 (41%)
TM helix 4 183..205 CDD:320458 4/21 (19%)
TM helix 5 230..260 CDD:320458 7/29 (24%)
TM helix 6 287..317 CDD:320458 14/29 (48%)
TM helix 7 327..352 CDD:320458 6/24 (25%)

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