DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and tmtopsb

DIOPT Version :10

Sequence 1:NP_477096.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001299608.2 Gene:tmtopsb / 100334480 ZFINID:ZDB-GENE-091118-50 Length:448 Species:Danio rerio


Alignment Length:334 Identity:87/334 - (26%)
Similarity:157/334 - (47%) Gaps:52/334 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIYYHAGFYIAFIVLMLSSIFG 69
            |..|..|:::::..|.|:.|.||                            .:..:.|.....||
Zfish    67 GGEGTGAHLDENHSDHSLSPTGH----------------------------LVVAVCLGFIGTFG 103

  Fly    70 ---NGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCT-NMPHYLINATVGYIVGGDLGCDIYALN 130
               |.||:.:|...|.||:|.|.|::::::.||.:|. ..|.....:|.|..:.|..||..|...
Zfish   104 FLNNTLVLVLFCRYKVLRSPMNCLLISISVSDLLVCVLGTPFSFAASTQGRWLIGRAGCVWYGFI 168

  Fly   131 GGISGMGASITNAFIAFDRYKTI--SNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQ 193
            ....|:.:.|:.|.::::||.|:  |...|. .:|.::|:.|.|:|:::..:::.|||. |..|.
Zfish   169 NSFLGVVSLISLAVLSYERYCTMMGSTQADS-TNYRKVVIGIAFSWIYSMVWTLPPLFG-WSCYG 231

  Fly   194 PEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNV 258
            |||..||||.::...|..|..::..:||:..::|..:|:.||.:|...:        .|..::| 
Zfish   232 PEGPGTTCSVNWAARTPNNVSYIVCLFVFCLILPFIVIVYSYGRLLQAI--------TQVSRIN- 287

  Fly   259 KSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKS 323
                   ...:...|.|:....:.:.:.::|.|.||.::||:..||...|:||..|::|.|..||
Zfish   288 -------TVVSRKREQRVLFMVVTMVVCYLLCWLPYGIMALLATFGHPGLVTPAASIVPSLLAKS 345

  Fly   324 VSCLDPWVY 332
            .:.::|.:|
Zfish   346 STVINPIIY 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_477096.1 7tmA_photoreceptors_insect 54..343 CDD:320207 79/285 (28%)
TM helix 1 54..80 CDD:320207 7/28 (25%)
TM helix 2 87..112 CDD:320207 6/25 (24%)
TM helix 3 124..154 CDD:320207 8/31 (26%)
TM helix 4 164..184 CDD:320207 4/19 (21%)
TM helix 5 212..241 CDD:320207 8/28 (29%)
TM helix 6 271..301 CDD:320207 8/29 (28%)
TM helix 7 311..336 CDD:320207 8/22 (36%)
tmtopsbNP_001299608.2 None

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