DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh5 and opn6a

DIOPT Version :9

Sequence 1:NP_001285859.1 Gene:Rh5 / 34615 FlyBaseID:FBgn0014019 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001096345.1 Gene:opn6a / 100124934 XenbaseID:XB-GENE-5872637 Length:400 Species:Xenopus tropicalis


Alignment Length:334 Identity:79/334 - (23%)
Similarity:144/334 - (43%) Gaps:46/334 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 AHWRG------FREAPIYYHAGFYIAFIVLMLS--SIFGNGLVIWIFSTSKSLRTPSNLLILNLA 95
            |.||.      .:|.|:.......|...:|.|.  |.|||.:||::....::...|::.|..|||
 Frog     9 APWRNNNLTLLQKENPLTEQGETIIGIYLLALGWLSWFGNSIVIFVLYKQRANLLPTDYLTFNLA 73

  Fly    96 IFDLFMCTNMPHY------LINA--TVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKT 152
            :.|  ..|::..|      :.|.  ..|:::.....|.:......:.|:.:..|...|:..||..
 Frog    74 VSD--ASTSVFGYSRGIIEIFNVFRDDGFLITSIWTCQVDGFLTLLFGLASINTLTLISVTRYIK 136

  Fly   153 ISNPIDGR-LSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDEN--RL 214
            ..:|.... :|.|.|.:.:...|:.|..:||.||.. ||.|: :....||..|:...:...  :.
 Frog   137 GCHPQRANCISNGSITISLALIWIAALFWSVAPLLG-WGSYR-DRMYGTCEIDWTKASFSTIYKS 199

  Fly   215 FVRTIFVWSYVIPMTMILVSYYKLFTHVR-----VHEKMLAEQAKKMNVKSLSANANADNMSVEL 274
            ::.:||:..:.:|:.:::..|..:...|:     ..|..|:|:.:||                |.
 Frog   200 YIISIFICCFFLPVMVMVFCYVSIINTVKSSRALTSEGDLSERQRKM----------------ER 248

  Fly   275 RIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKY 339
            .:.:.:::|...||:||:||:|:::....|  ..:....|:|..|..||.|..:|.:|.....|:
 Frog   249 DVTRVSVVICTAFIVAWSPYAVISMWSACG--YYVPSLTSILAALFAKSASFYNPLIYFGMSSKF 311

  Fly   340 RLELERRLP 348
            |.:|...||
 Frog   312 RKDLCVVLP 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh5NP_001285859.1 7tm_4 60..>236 CDD:304433 43/188 (23%)
7tm_1 69..332 CDD:278431 63/278 (23%)
opn6aNP_001096345.1 7tmA_Opsin5_neuropsin 31..315 CDD:320202 71/305 (23%)
TM helix 1 32..58 CDD:320202 9/25 (36%)
TM helix 2 65..92 CDD:320202 7/28 (25%)
TM helix 3 108..138 CDD:320202 6/29 (21%)
TM helix 4 151..169 CDD:320202 5/17 (29%)
TM helix 5 197..227 CDD:320202 4/29 (14%)
TM helix 6 245..275 CDD:320202 11/45 (24%)
TM helix 7 283..308 CDD:320202 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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