Protein Alignment Rh5 and opn1lw

DIOPT Version :10

• Sequence 1: NP_477096.1
• Gene: Rh5 / 34615
• FlyBaseID: FBgn0014019
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001096331.1
• Gene: opn1lw / 100124917
• XenbaseID: XB-GENE-955009
• Length: 365
• Species: Xenopus tropicalis
• Alignment Length: 363
• Identity: 86/363 - (23%)
• Similarity: 159/363 - (43%)
• Gaps: 62/363 - (17%)

  Fly    42 RGFREAPIYYHA--------GFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFD 98
            ||..|.|.|:.|        ..::.|:|  |:|:|.||||:......|.||.|.|.:::|:||.|
 Frog    36 RGPFEGPNYHIAPRWVYNISSLWMIFVV--LASVFTNGLVLVATLKFKKLRHPLNWILVNMAIAD 98

  Fly    99 L---------FMCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRYKTIS 154
            |         .:|        |...||.|.|...|.:......:.|:.|..:...||::|:..:.
 Frog    99 LGETVIASTISVC--------NQIFGYFVLGHPMCILEGYTVSVCGIAALWSLTVIAWERWFVVC 155

  Fly   155 NP-----IDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDEN-- 212
            .|     .||:|:    ...|:|:|:||..:...|:|. |.||.|.|..|:|..|..:.:.:.
 Frog   156 KPFGNIKFDGKLA----ATGIIFSWVWAAGWCAPPIFG-WSRYWPHGLKTSCGPDVFSGSSDPGV 215

  Fly   213 RLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIA 277
            :.::..:.:...:||:.:|::.|    .||.:..:.:|:|.|:          :......|..::
 Frog   216 QSYMLVLMITCCIIPLAIIVLCY----MHVWLTIRQVAQQQKE----------SESTQKAEREVS 266

  Fly   278 KAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYR-- 340
            :..:::.:.:|..|.||:..|....|.......|..:.:|....||.:..:|.:|...:.::|
 Frog   267 RMVVVMIIAYIFCWGPYTFFACFAAFNPGYNFHPLAAAMPAYFAKSATIYNPIIYVFMNRQFRNC 331

  Fly   341 -LELERRLPWLGIREKHATSGTSGGQESVASVSGDTLA 377
             .:|      .|.:....:..:|..:..|:|||..:::
 Frog   332 IYQL------FGKKVDDGSEVSSTSRTEVSSVSNSSVS 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh5	NP_477096.1	7tmA_photoreceptors_insect	54..343	CDD:320207	73/307 (24%)
		TM helix 1	54..80	CDD:320207	9/25 (36%)
		TM helix 2	87..112	CDD:320207	7/33 (21%)
		TM helix 3	124..154	CDD:320207	6/29 (21%)
		TM helix 4	164..184	CDD:320207	5/19 (26%)
		TM helix 5	212..241	CDD:320207	4/30 (13%)
		TM helix 6	271..301	CDD:320207	6/29 (21%)
		TM helix 7	311..336	CDD:320207	6/24 (25%)
opn1lw	NP_001096331.1	7tmA_LWS_opsin	41..332	CDD:320209	76/319 (24%)
		TM helix 1	54..80	CDD:320209	9/27 (33%)
		TM helix 2	87..114	CDD:320209	8/34 (24%)
		TM helix 3	125..155	CDD:320209	6/29 (21%)
		TM helix 4	166..188	CDD:320209	7/25 (28%)
		TM helix 5	215..245	CDD:320209	6/33 (18%)
		TM helix 6	260..290	CDD:320209	6/29 (21%)
		TM helix 7	300..325	CDD:320209	6/24 (25%)