Protein Alignment Rh5 and rho

DIOPT Version :10

• Sequence 1: NP_477096.1
• Gene: Rh5 / 34615
• FlyBaseID: FBgn0014019
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001090803.1
• Gene: rho / 100037900
• XenbaseID: XB-GENE-966887
• Length: 354
• Species: Xenopus tropicalis
• Alignment Length: 396
• Identity: 99/396 - (25%)
• Similarity: 164/396 - (41%)
• Gaps: 64/396 - (16%)

  Fly     3 INGPSGPQAYVNDSLGDGSVFPMGHGYPAEY-QHMVHAHWRGFREAPIYYHAGFYIAFIVLMLSS 66
            :||..||..|:..|...|.|     ..|.:| |:.:...|:       |.....|:..::|:...
 Frog     1 MNGTEGPNFYIPMSNKTGVV-----RSPFDYPQYYLAEPWK-------YSALAAYMFLLILLGFP 53

  Fly    67 IFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCTNMPHYLINATV-------GYIVGGDLGC 124
            |  |.:.:::....|.||||.|.::|||...:.||      .|...||       ||.:.|..||
 Frog    54 I--NFMTLYVTIQHKKLRTPLNYILLNLVFANHFM------VLCGFTVTMYTSMHGYFIFGQTGC 110

  Fly   125 DIYALNGGISGMGASITNAFIAFDRYKTISNPI-DGRLSYGQIVLLILFTWLWATPFSVLPLFQI 188
            .|......:.|..|..:...:|.:||..:..|: :.|......::.::|||:.|...:..|||.
 Frog   111 YIEGFFATLGGEMALWSLVVLAIERYVVVCKPMANFRFGENHAIMGVVFTWIMALSCAAPPLFG- 174

  Fly   189 WGRYQPEGFLTTCSFDYLTNTDE--NRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAE 251
            |.||.|||...:|..||.|...|  |..||..:|:..:.||:.:|...|.:|...|:   :..|:
 Frog   175 WSRYIPEGMQCSCGVDYYTLKPEVNNESFVVYMFIVHFTIPLCVIFFCYGRLLCTVK---EAAAQ 236

  Fly   252 QAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSML 316
            |.:           :|.....|..:.:..:::.:.|::.|.||:.||......:.....|....:
 Frog   237 QQE-----------SATTQKAEKEVTRMVVMMVIFFLICWVPYAYVAFYIFTHQGSDFGPVFMTV 290

  Fly   317 PCLACKSVSCLDPWVYATSHPKYRLELERRL-----PWLGIREKHATSGTSGGQESVASVSGDTL 376
            |....||.:..:|.:|...:.::|..|...|     |:             |.:|..::.|..|.
 Frog   291 PAFFAKSSAIYNPVIYIVLNKQFRNCLITTLCCGKNPF-------------GDEEGSSAASSKTE 342

  Fly   377 ALSVQN 382
            |.||.:
 Frog   343 ASSVSS 348

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh5	NP_477096.1	7tmA_photoreceptors_insect	54..343	CDD:320207	76/298 (26%)
		TM helix 1	54..80	CDD:320207	4/25 (16%)
		TM helix 2	87..112	CDD:320207	7/24 (29%)
		TM helix 3	124..154	CDD:320207	7/29 (24%)
		TM helix 4	164..184	CDD:320207	4/19 (21%)
		TM helix 5	212..241	CDD:320207	9/28 (32%)
		TM helix 6	271..301	CDD:320207	7/29 (24%)
		TM helix 7	311..336	CDD:320207	6/24 (25%)
rho	NP_001090803.1	Rhodopsin_N	3..37	CDD:313611	11/45 (24%)
		7tmA_MWS_opsin	38..317	CDD:381742	76/301 (25%)
		TM helix 1	39..65	CDD:381742	4/27 (15%)
		TM helix 2	72..99	CDD:381742	9/32 (28%)
		TM helix 3	110..140	CDD:381742	7/29 (24%)
		TM helix 4	151..173	CDD:381742	5/21 (24%)
		TM helix 5	200..230	CDD:381742	9/29 (31%)
		TM helix 6	245..275	CDD:381742	7/29 (24%)
		TM helix 7	285..310	CDD:381742	6/24 (25%)